View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738-Insertion-4 (Length: 620)
Name: NF5738-Insertion-4
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738-Insertion-4 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 22 - 618
Target Start/End: Complemental strand, 48975588 - 48974992
Alignment:
| Q |
22 |
gaacaagttcagtatatcaagacaaagtgtggctgaggccccaacgtaaccatcacatgtcctttgacctggtgtttgtgttagatactgtaatacataa |
121 |
Q |
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| T |
48975588 |
gaacaagttcagtatatcaagacaaagtgtggctgaggccccaacgtaaccatcacatgtcctttgacctggtgtttgtgttagatactgtaatacataa |
48975489 |
T |
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| Q |
122 |
ccgaattaaatcattggcattggaaataagccgaaaggggaatgtaagaatgttggccaagagggaaggacatctacatgagaggacggcaagagtaaaa |
221 |
Q |
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| T |
48975488 |
ccgaattaaatcattggcattggaaagaagccgaaaggggaatgtaagaatgttggccaagagggaaggacatctacatgagaggacggcaagagtaaaa |
48975389 |
T |
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| Q |
222 |
caagaactacgccacaacaatttgcaattaaacaatgtaaatggttttttcggatttcacatcgaagtgtagtaattaagcttgtttttccaactataaa |
321 |
Q |
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| T |
48975388 |
caagaactacgccacaacaatttgcaattaaacaatgtaaatggtttttttggatttcacatcgaagtgtagtaattaagcttgtttttccaactataaa |
48975289 |
T |
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| Q |
322 |
tacctgcaatctgaactcagattgtctatgccaccacaatgggtgctctaaatttagaagaacgtccattgaaatttcatttcattccataccctgcacc |
421 |
Q |
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| T |
48975288 |
tacctgcaatctgaactcagattgtctatgccaccacaatgggtgctctaaatttagaagaacgtccattgaaatttcatttcattccataccctgcacc |
48975189 |
T |
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| Q |
422 |
tggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctccaatgcccaaatcattctc |
521 |
Q |
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| T |
48975188 |
tggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatcattctc |
48975089 |
T |
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| Q |
522 |
aaatccatcccttctcacaaccacctccgccttcatactgttccatttccttcccaccaagtaggcttgccgctcggtgttgaaaaccttgcctttg |
618 |
Q |
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| T |
48975088 |
aaatccatcccttctcacaaccacctccgccttcatactgttccatttccttcccaccaagtaggcttgccgctcggtgttgaaaaccttgcctttg |
48974992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 574
Target Start/End: Original strand, 48911428 - 48911585
Alignment:
| Q |
417 |
gcacctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctccaatgcccaaatca |
516 |
Q |
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| T |
48911428 |
gcacctggccacatgatccctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatcc |
48911527 |
T |
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| Q |
517 |
ttctcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttc |
574 |
Q |
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| T |
48911528 |
ttggcaaatctattcctttaaaccaacaccttcgtattcacactgttccatttccttc |
48911585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 420 - 577
Target Start/End: Original strand, 5597 - 5754
Alignment:
| Q |
420 |
cctggccacatgacccctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctccaatgcccaaatcattc |
519 |
Q |
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| T |
5597 |
cctggtcatatgatccctttatgtgacatagcaacactctttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttg |
5696 |
T |
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| Q |
520 |
tcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttccca |
577 |
Q |
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| T |
5697 |
gcaaatccatccctttaaaccaacacctccgtattcacaccgttccatttccttccca |
5754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 587
Target Start/End: Original strand, 9639 - 9748
Alignment:
| Q |
478 |
atgttaccatcattaccactccctccaatgcccaaatcattctcaaatccatcccttctcacaaccacctccgccttcatactgttccatttccttccca |
577 |
Q |
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||||||||||||| ||||| || ||||| || |||||| || |||||| ||||||| || | || ||||| |||| |||||||||||||||||||| |
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| T |
9639 |
atgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttccatttccttccca |
9738 |
T |
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| Q |
578 |
ccaagtaggc |
587 |
Q |
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| T |
9739 |
agaagtaggc |
9748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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