View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738-Insertion-5 (Length: 583)
Name: NF5738-Insertion-5
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 36717992 - 36718353
Alignment:
| Q |
8 |
catacttctttcatgtatgttatttggatatttttgcaaccatgaacttgaaggctatgtcactgaatgttaggttcatataaatagtaccttcctctgc |
107 |
Q |
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| T |
36717992 |
catacttctttcatgtatgttatttggacatttttgcaaccatgaacttgaaggctatgtcactgaatgttaggttcatataaatagtaccttcctctgc |
36718091 |
T |
|
| Q |
108 |
attttgtaatttagcctaatattt-gatcattatctgtaatctttaagattacatgttagattaaaaagacaaaggtacaaaaagcttacgcaaacaaca |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36718092 |
attttgtaatttagcctaatattttgatcattatctgtaatctttaagattacatgttagattaaaaagacaaaggtacaaaaagcttacgcaaacaaca |
36718191 |
T |
|
| Q |
207 |
aggtaaaatgcatgtatatgatgatcttgagagcaatgcagggatggacaaaaaacatgcatgattatggtccatcattttgcttgcgtaagcttgaatt |
306 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36718192 |
aggtaaaatgcatgtatatgattatcttgagagcaatgcagggatggac-aaaaacatgcatgattatggtccatcattttgcttgcgtaagcttgaatt |
36718290 |
T |
|
| Q |
307 |
taatttaaagttagaatggcatgcaaacccatggggtttagtatgggaaaggaaacttgtttt |
369 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| |
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| T |
36718291 |
taatttaaagttagaatggcatgcaaaccggtgggatttagtatgggaaaagaaacttatttt |
36718353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 16044166 - 16044097
Alignment:
| Q |
400 |
aaagaggaacatatattttatgatagtctgtccacatcatatcatccatgagcattatctctcctccatt |
469 |
Q |
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| T |
16044166 |
aaagaggaacacatattttataatggtctgcccacactatatcatccatcaacattctctctcctccatt |
16044097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 9453836 - 9453731
Alignment:
| Q |
393 |
tcagattaaagaggaacatatattttatgatagtctgtccacatcatatcatccatgagcattatctctcctccatttccccacccatacactcacccac |
492 |
Q |
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|||||||||||||||| | || ||||||||||||| ||||||| |||||||||| | ||||| ||||||||||||| |||||| ||| ||||||||||| |
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| T |
9453836 |
tcagattaaagaggaagacatgttttatgatagtccgtccacaccatatcatccttctgcattctctctcctccattcccccactcatgcactcacccac |
9453737 |
T |
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| Q |
493 |
caccac |
498 |
Q |
| |
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|||||| |
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| T |
9453736 |
caccac |
9453731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 494
Target Start/End: Original strand, 17766617 - 17766725
Alignment:
| Q |
386 |
ttgacaatcagattaaagaggaacatatattttatgatagtctgtccacatcatatcatccatgagcattatctctcctccatttccccacccatacact |
485 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||| | |||| |||||||||||| ||||| ||| |||| |
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| T |
17766617 |
ttgacgatcagattcaagaggaacacatattttatgatagtctacccacaccatatcatccattatcattctctctcctccatcctcccactcatgcact |
17766716 |
T |
|
| Q |
486 |
cacccacca |
494 |
Q |
| |
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||||||||| |
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| T |
17766717 |
cacccacca |
17766725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 498
Target Start/End: Original strand, 36013220 - 36013324
Alignment:
| Q |
395 |
agattaaagaggaacatatattttatgatagtctgtccacatcatatcatccatgagcattatctctcctccatt-tccccacccatacactcacccacc |
493 |
Q |
| |
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|||||||||| ||||| | |||||||||| || |||||| | |||||||||||| | |||| |||||| |||||| |||||| ||| |||||| ||||| |
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| T |
36013220 |
agattaaagaagaacacaaattttatgatggtatgtccagaccatatcatccatcaacattctctctcttccattccccccactcatgcactcaaccacc |
36013319 |
T |
|
| Q |
494 |
accac |
498 |
Q |
| |
|
||||| |
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|
| T |
36013320 |
accac |
36013324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 498
Target Start/End: Original strand, 47335755 - 47335859
Alignment:
| Q |
395 |
agattaaagaggaacatatattttatgatagtctgtccacatcatatcatccatgagcattatctctcctccatt-tccccacccatacactcacccacc |
493 |
Q |
| |
|
|||||||||| ||||| | ||||||| || || |||||| | ||||||||||| | ||||||||||| |||||| |||||| ||| |||||| ||||| |
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| T |
47335755 |
agattaaagaagaacacaaattttataatggtatgtccatactatatcatccatcaacattatctctcttccattccccccactcatgcactcaaccacc |
47335854 |
T |
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| Q |
494 |
accac |
498 |
Q |
| |
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||||| |
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| T |
47335855 |
accac |
47335859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 467
Target Start/End: Original strand, 34716484 - 34716559
Alignment:
| Q |
392 |
atcagattaaagaggaacatatattttatgatagtctgtccacatcatatcatccatgagcattatctctcctcca |
467 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| |||||||||||| | |||| ||||| ||||| |
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| T |
34716484 |
atcagattaaagaggaacacggtttttatgatagtctatccacaccatatcatccatcaacattctctctactcca |
34716559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 5873219 - 5873268
Alignment:
| Q |
386 |
ttgacaatcagattaaagaggaacatatattttatgatagtctgtccaca |
435 |
Q |
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||||| || |||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
5873219 |
ttgaccattagattaaaaaggaacacatattttatgatggtctgtccaca |
5873268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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