View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738-Insertion-6 (Length: 545)
Name: NF5738-Insertion-6
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738-Insertion-6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Complemental strand, 8535328 - 8534791
Alignment:
| Q |
8 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535328 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
8535229 |
T |
|
| Q |
108 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactct |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
8535228 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaagccccttccacttccacctaaccactct |
8535129 |
T |
|
| Q |
208 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggc |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8535128 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggc |
8535029 |
T |
|
| Q |
308 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535028 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
8534929 |
T |
|
| Q |
408 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccagtcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgtt |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8534928 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgtt |
8534829 |
T |
|
| Q |
508 |
cttgctttcactactcaacaactcctttccaaaatcac |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
8534828 |
cttgctttcactactcaacaactcctttccaaaatcac |
8534791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Complemental strand, 8600567 - 8600030
Alignment:
| Q |
8 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8600567 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
8600468 |
T |
|
| Q |
108 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
8600467 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaagccccttccacttccacctaaccactct |
8600368 |
T |
|
| Q |
208 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8600367 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggc |
8600268 |
T |
|
| Q |
308 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8600267 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
8600168 |
T |
|
| Q |
408 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccagtcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8600167 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgtt |
8600068 |
T |
|
| Q |
508 |
cttgctttcactactcaacaactcctttccaaaatcac |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
8600067 |
cttgctttcactactcaacaactcctttccaaaatcac |
8600030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 8612859 - 8613396
Alignment:
| Q |
8 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8612859 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
8612958 |
T |
|
| Q |
108 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
8612959 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaagccccttccacttccacctaaccactct |
8613058 |
T |
|
| Q |
208 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggc |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8613059 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggc |
8613158 |
T |
|
| Q |
308 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8613159 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
8613258 |
T |
|
| Q |
408 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccagtcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8613259 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgtt |
8613358 |
T |
|
| Q |
508 |
cttgctttcactactcaacaactcctttccaaaatcac |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
8613359 |
cttgctttcactactcaacaactcctttccaaaatcac |
8613396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Original strand, 8547620 - 8548141
Alignment:
| Q |
8 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8547620 |
attggacggtacaaataacacatttagctacactagcatatcagtttgatactacacaaaacaagattaagattaagatggaggtaaacggtgagaatag |
8547719 |
T |
|
| Q |
108 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
8547720 |
ggatagcagaagagtgatcgatccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaagccccttccacttccacctaaccactct |
8547819 |
T |
|
| Q |
208 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8547820 |
ttagatgccaccactttcatctcctcccgcgctcatcacggccatatcgccttcattgacgcctccaccggccaccaattcacttaccaacaactctggc |
8547919 |
T |
|
| Q |
308 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8547920 |
gatccgtcgactccgtcacctcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgt |
8548019 |
T |
|
| Q |
408 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccagtcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgtt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8548020 |
ctgtctctccgtcatgtccctcggcgctatcatcaccaccaccaatcctctcaatacatctggtgaaattgctaaacagattgctgattccaaacctgtt |
8548119 |
T |
|
| Q |
508 |
cttgctttcactactcaacaac |
529 |
Q |
| |
|
|||||||||||||||||||||| |
|
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| T |
8548120 |
cttgctttcactactcaacaac |
8548141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 128 - 506
Target Start/End: Complemental strand, 14752879 - 14752501
Alignment:
| Q |
128 |
atccaagaagtgggttttgcagcagcaattcaatcttctacagcaagagaaaaccccttcaacttccacctaaccactctttagatgccaccactttcat |
227 |
Q |
| |
|
|||||| |||||||||||| ||| |||||||||||||||||||||||| |||||||| | |||||| || || || || |||||||||||||| || || |
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|
| T |
14752879 |
atccaacaagtgggttttgtagctccaattcaatcttctacagcaagaggaaacccctcctacttcctccaaatcagtccttagatgccaccacctttat |
14752780 |
T |
|
| Q |
228 |
ctcctcccgcgctcatcacggccacatcgccttcattgacgcctccaccggccaccaattcacctaccaacaactctggcgatccgtcgactccgtcacc |
327 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| |||||||||||||||||||| || |||||||||||||| ||| || ||||||| | ||| || |
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|
| T |
14752779 |
ctcctcccgcgcccatcacggccacactgctttcatcgacgcctccaccggccaccactttacctaccaacaactttggagagccgtcgatgctgtctcc |
14752680 |
T |
|
| Q |
328 |
tcctcactctccaacatgggtatccgtaaaggtgacgtcatccttctcctctctcccaactccatctatttccctgttgtctgtctctccgtcatgtccc |
427 |
Q |
| |
|
||||| |||||||||||||| ||| || ||||| || ||||| ||||| ||||| |||||||| || |||||||| || |||||| |||||||||| |
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| T |
14752679 |
tcctctctctccaacatgggaatcaaaaagggtgatgttatcctcctcctttctcctaactccatttacttccctgtggtgtgtctcagtgtcatgtccc |
14752580 |
T |
|
| Q |
428 |
tcggcgctatcatcaccaccaccagtcctctcaatacatctggtgaaattgctaaacagatcgctgattccaaacctgt |
506 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||| ||| |||||| || || |||||||| |||||||||||||| |
|
|
| T |
14752579 |
tcggcgccatcatcaccaccaccaatcccctcaacacagtacatgaaatcgcgaagcagatcgcggattccaaacctgt |
14752501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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