View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5738-Insertion-8 (Length: 310)

Name: NF5738-Insertion-8
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5738-Insertion-8
NF5738-Insertion-8
[»] chr4 (4 HSPs)
chr4 (8-310)||(54396691-54396992)
chr4 (43-122)||(35132750-35132829)
chr4 (48-117)||(23587525-23587594)
chr4 (48-117)||(23596377-23596446)
[»] chr7 (17 HSPs)
chr7 (47-123)||(7877519-7877595)
chr7 (48-241)||(8017081-8017274)
chr7 (48-117)||(8102974-8103043)
chr7 (47-123)||(8602280-8602356)
chr7 (48-123)||(8590945-8591020)
chr7 (43-114)||(17260543-17260614)
chr7 (50-117)||(39985955-39986022)
chr7 (43-117)||(10494166-10494240)
chr7 (47-108)||(8382677-8382738)
chr7 (74-123)||(8659696-8659745)
chr7 (43-123)||(3147574-3147654)
chr7 (38-122)||(8636130-8636214)
chr7 (71-114)||(6789842-6789885)
chr7 (43-117)||(13333248-13333322)
chr7 (50-123)||(29581627-29581700)
chr7 (74-114)||(1301797-1301837)
chr7 (74-114)||(8585501-8585541)
[»] chr1 (1 HSPs)
chr1 (47-122)||(4678345-4678420)
[»] chr2 (4 HSPs)
chr2 (48-117)||(12234996-12235065)
chr2 (71-122)||(7542556-7542607)
chr2 (50-117)||(12245198-12245265)
chr2 (47-123)||(16657303-16657379)
[»] chr5 (1 HSPs)
chr5 (78-124)||(28220288-28220334)
[»] chr8 (1 HSPs)
chr8 (78-123)||(43745184-43745229)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 54396691 - 54396992
Alignment:
Q  8 gctcattaataatcctcaacacatacaaacccggaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaa 107  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396691 gctcattaataatcctcaacacattcaaacccg-aaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaa 54396789  T
Q  108 cagcattcttcacaggatgaccaagaaaagcttcagcaacttctctcatcctgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttc 207  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396790 cagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttc 54396889  T
Q  208 acctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggagaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396890 acctttgtaattaacaacgatcataggtttttcagcgggacctggaacgactttaaacggccatagtttcatgtcgttttgaactgattcatcggagaat 54396989  T
Q  308 cta 310  Q
    |||    
T  54396990 cta 54396992  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 35132750 - 35132829
Alignment:
Q  43 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacag 122  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| |||||||| ||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacag 35132829  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 23587594 - 23587525
Alignment:
Q  48 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    |||| |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587594 caccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 23596446 - 23596377
Alignment:
Q  48 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    |||||||||| || |||||||||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596446 caccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 7877595 - 7877519
Alignment:
Q  47 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| |||||||| |||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgacagg 7877519  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 8017274 - 8017081
Alignment:
Q  48 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacaggatgaccaagaaaagcttcagcaac 147  Q
    |||| ||||| || || |||||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||    ||| ||  ||||||||||||     
T  8017274 caccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgaggtaagcttcagcaat 8017175  T
Q  148 ttctctcatcctgatcaacaccattgaagaaatttcctctgctgcaaatttcttctcttcacctttgtaattaacaacgatcataggtttttca 241  Q
     || | |||| | || |  ||||| || ||||||||||| || ||||||| ||| || ||||| ||||| |||||| | ||||| || ||||||    
T  8017174 ctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattggcttttca 8017081  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 8102974 - 8103043
Alignment:
Q  48 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    ||||||||||||| || |||||||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  8102974 caccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 8602280 - 8602356
Alignment:
Q  47 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    |||||||||||||| || ||||  || ||||||||||| |||||||| || ||||||||||| |||||||| |||||    
T  8602280 gcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttgacagg 8602356  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 8590945 - 8591020
Alignment:
Q  48 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    ||||||||||||| |||||||  |  ||||||||||| |||||||| || ||||||||||| |||||||| |||||    
T  8590945 caccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattcttgacagg 8591020  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  43 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 114  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 39985955 - 39986022
Alignment:
Q  50 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    |||||||| || ||||||||||| || || ||||| || |||||||| ||||||||||||||||||||    
T  39985955 ccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 10494240 - 10494166
Alignment:
Q  43 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattctt 10494166  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  47 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 108  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 8659696 - 8659745
Alignment:
Q  74 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    |||||||||||||| || ||||| || |||||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcacagg 8659745  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 3147574 - 3147654
Alignment:
Q  43 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| |||||||| |||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattcttgacagg 3147654  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 8636214 - 8636130
Alignment:
Q  38 ccggaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacag 122  Q
    |||| ||| |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || |||||||| ||||    
T  8636214 ccggcaatggcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattcttgacag 8636130  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  71 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 114  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 13333322 - 13333248
Alignment:
Q  43 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| ||||||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattctt 13333248  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 29581700 - 29581627
Alignment:
Q  50 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    ||||||||||| || ||||  || ||||||||||||||||||||||| || ||||  || |||||||| |||||    
T  29581700 ccagcatctttggtggcttttcgctgagaatcattgaaataagcaggcacggtaatcactgcattctttacagg 29581627  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 1301797 - 1301837
Alignment:
Q  74 tgagaatcattgaaataagcaggaacagtaacaacagcatt 114  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 8585541 - 8585501
Alignment:
Q  74 tgagaatcattgaaataagcaggaacagtaacaacagcatt 114  Q
    ||||||||||||||||||||||| ||||| ||||| |||||    
T  8585541 tgagaatcattgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 4678420 - 4678345
Alignment:
Q  47 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacag 122  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcacag 4678345  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Original strand, 12234996 - 12235065
Alignment:
Q  48 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| ||||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 7542556 - 7542607
Alignment:
Q  71 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacag 122  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacag 7542607  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  50 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 117  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 16657379 - 16657303
Alignment:
Q  47 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || |||||||||||||||||||| |||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattcttgacagg 16657303  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 28220288 - 28220334
Alignment:
Q  78 aatcattgaaataagcaggaacagtaacaacagcattcttcacagga 124  Q
    ||||||||||||||||||| ||||||| ||| |||||||| ||||||    
T  28220288 aatcattgaaataagcaggcacagtaataactgcattcttgacagga 28220334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 43745184 - 43745229
Alignment:
Q  78 aatcattgaaataagcaggaacagtaacaacagcattcttcacagg 123  Q
    |||||||||||||||| || ||||||||||| |||||||| |||||    
T  43745184 aatcattgaaataagccggcacagtaacaactgcattcttgacagg 43745229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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