View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_high_20 (Length: 265)
Name: NF5738_high_20
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 42841036 - 42840951
Alignment:
| Q |
11 |
cagagattactgaactgtataaaatatggtggaggaagaagctgagaagaggaacaataagaaagatgcagagaagaagagctgag |
96 |
Q |
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| T |
42841036 |
cagagattactgaactgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaagaaaagctgag |
42840951 |
T |
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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 23388588 - 23388503
Alignment:
| Q |
11 |
cagagattactgaactgtataaaatatggtggaggaagaagctgagaagaggaacaataagaaagatgcagagaagaagagctgag |
96 |
Q |
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| T |
23388588 |
cagagattacagaactgtataaaatatggtggaggaagaagcagggaagaggaacaataagaaagatgcagagaagaagagctgag |
23388503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 23388427 - 23388359
Alignment:
| Q |
172 |
gtgcaattggattaggattgtgacaacagacgagtcatttgttctctgagaatgcaaagtcatttattt |
240 |
Q |
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| T |
23388427 |
gtgcaattggattaggattgtgacaacagacgagtcatttgttctcttagaatgcaaagtcatttattt |
23388359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 36940904 - 36940950
Alignment:
| Q |
32 |
aaatatggtggaggaagaagctgagaagaggaacaataagaaagatgca |
80 |
Q |
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| T |
36940904 |
aaatatggtggaggaagaagcggagaagagga--gataagaaagatgca |
36940950 |
T |
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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 28424665 - 28424587
Alignment:
| Q |
14 |
agattactgaactgtataaaatatggtggaggaagaagctgagaagaggaacaataagaaagatgcagagaagaagagc |
92 |
Q |
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| T |
28424665 |
agattacagaactgtataaaatatggtggaggaagaagcagagaagaggaacaataagaaagatgcagagaagaagagc |
28424587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 28424507 - 28424432
Alignment:
| Q |
172 |
gtgcaattggattaggattgtgacaacagacgagtcatttgttctctgagaatgcaaagtcatttatttgacatttt |
248 |
Q |
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| T |
28424507 |
gtgcaattggagtaggattatgaca-caaatgagtcatttgttctctgagaatgcaaagtcatttatttggcatttt |
28424432 |
T |
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