View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_high_22 (Length: 243)
Name: NF5738_high_22
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_high_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 6587270 - 6587499
Alignment:
| Q |
14 |
ccttcaacttaatttatgtgacatcacaaatattaaacatatacctttcatttctattacttccattcactcatttttcatcatcttttctcttctatat |
113 |
Q |
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| T |
6587270 |
ccttcaacttaatttatgtgacatcacaaatattaaacatatacctttcatttctattacttccattcactcatttttcatcatcttttctcttctatat |
6587369 |
T |
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| Q |
114 |
attatcatctcacagttgcactaactcagtcttattggacttgggtgattttctaatatctaaactataaaccctagatcacttaaacaacttctatcga |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6587370 |
attctcatctcacagttgcactaactcagtcttattggacttgggtgattttctgatatctaaactataaaccctagatcacttaaacaacttctatcga |
6587469 |
T |
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| Q |
214 |
caacacaaaaaacaaagtcatataatcaac |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
6587470 |
caacacaaaaaacaaagtcatataatcaac |
6587499 |
T |
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