View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5738_high_3 (Length: 843)

Name: NF5738_high_3
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5738_high_3
NF5738_high_3
[»] chr8 (19 HSPs)
chr8 (363-829)||(17067841-17068305)
chr8 (363-829)||(17580052-17580516)
chr8 (18-572)||(29054462-29055012)
chr8 (18-572)||(21075900-21076416)
chr8 (18-503)||(17630791-17631261)
chr8 (18-572)||(20289270-20289786)
chr8 (151-572)||(10861549-10861952)
chr8 (18-300)||(17068340-17068622)
chr8 (18-300)||(17579651-17579933)
chr8 (18-503)||(34964377-34964843)
chr8 (18-136)||(10861438-10861557)
chr8 (363-447)||(17579968-17580052)
chr8 (482-573)||(10786846-10786937)
chr8 (127-272)||(3046537-3046681)
chr8 (18-122)||(3046400-3046507)
chr8 (368-422)||(3046830-3046884)
chr8 (364-414)||(44718711-44718762)
chr8 (284-338)||(3046756-3046810)
chr8 (69-119)||(44718251-44718301)
[»] scaffold0017 (1 HSPs)
scaffold0017 (18-567)||(37681-38223)
[»] chr2 (7 HSPs)
chr2 (18-573)||(14811174-14811723)
chr2 (18-573)||(14314016-14314562)
chr2 (507-566)||(27709937-27709996)
chr2 (124-168)||(13043622-13043666)
chr2 (167-228)||(29081152-29081213)
chr2 (507-572)||(32751109-32751174)
chr2 (62-122)||(13043503-13043563)
[»] chr3 (25 HSPs)
chr3 (18-572)||(39579803-39580340)
chr3 (18-573)||(4533370-4533922)
chr3 (62-494)||(958813-959237)
chr3 (18-498)||(25041311-25041785)
chr3 (112-572)||(39674088-39674529)
chr3 (18-421)||(42864321-42864712)
chr3 (118-572)||(53330421-53330860)
chr3 (118-572)||(53334105-53334544)
chr3 (118-572)||(53337782-53338221)
chr3 (18-170)||(21869148-21869301)
chr3 (124-280)||(22976519-22976673)
chr3 (455-572)||(42864250-42864368)
chr3 (18-123)||(22976389-22976493)
chr3 (488-572)||(53363115-53363199)
chr3 (18-123)||(29360074-29360179)
chr3 (508-567)||(27391352-27391411)
chr3 (18-90)||(39674532-39674604)
chr3 (18-105)||(41530320-41530407)
chr3 (18-53)||(959259-959294)
chr3 (368-421)||(25041308-25041361)
chr3 (284-337)||(29359793-29359846)
chr3 (124-157)||(29360014-29360047)
chr3 (18-53)||(53330383-53330418)
chr3 (18-53)||(53334067-53334102)
chr3 (18-53)||(53337744-53337779)
[»] chr7 (32 HSPs)
chr7 (18-573)||(30947455-30948006)
chr7 (18-572)||(19927885-19928419)
chr7 (61-494)||(25443577-25444001)
chr7 (18-223)||(26279576-26279781)
chr7 (18-224)||(40819561-40819768)
chr7 (254-572)||(40819769-40820069)
chr7 (279-572)||(37245166-37245443)
chr7 (370-572)||(26279779-26279982)
chr7 (124-228)||(22293075-22293179)
chr7 (157-228)||(22205102-22205173)
chr7 (157-228)||(22229566-22229637)
chr7 (191-283)||(37243003-37243094)
chr7 (124-228)||(45280984-45281088)
chr7 (28-123)||(22204964-22205059)
chr7 (28-123)||(22229680-22229775)
chr7 (507-572)||(25443519-25443584)
chr7 (18-122)||(22293205-22293307)
chr7 (507-572)||(22205404-22205469)
chr7 (507-572)||(22229270-22229335)
chr7 (368-420)||(45280729-45280781)
chr7 (368-422)||(15043301-15043355)
chr7 (368-422)||(26279858-26279912)
chr7 (368-422)||(36630392-36630446)
chr7 (368-422)||(36630251-36630305)
chr7 (365-422)||(22205352-22205409)
chr7 (365-422)||(22229330-22229387)
chr7 (69-122)||(26244664-26244717)
chr7 (126-166)||(36630746-36630786)
chr7 (18-53)||(25444019-25444054)
chr7 (417-503)||(15043269-15043356)
chr7 (288-338)||(45280804-45280854)
chr7 (68-106)||(45281169-45281207)
[»] chr6 (3 HSPs)
chr6 (62-573)||(21111998-21112490)
chr6 (18-572)||(8861950-8862478)
chr6 (243-572)||(11382414-11382737)
[»] chr5 (12 HSPs)
chr5 (18-433)||(8871283-8871691)
chr5 (18-338)||(13854324-13854644)
chr5 (159-572)||(36606086-36606480)
chr5 (127-280)||(6665857-6666009)
chr5 (124-280)||(32659069-32659224)
chr5 (18-123)||(6666038-6666143)
chr5 (18-128)||(36606474-36606588)
chr5 (417-572)||(6665622-6665776)
chr5 (369-422)||(6665692-6665745)
chr5 (61-116)||(32659258-32659313)
chr5 (523-572)||(8871240-8871289)
chr5 (124-165)||(30131211-30131252)
[»] chr4 (7 HSPs)
chr4 (61-478)||(54260130-54260528)
chr4 (500-572)||(563343-563415)
chr4 (21-99)||(26261550-26261628)
chr4 (369-415)||(26261054-26261100)
chr4 (174-224)||(26261273-26261323)
chr4 (535-572)||(54260056-54260093)
chr4 (124-165)||(26261383-26261424)
[»] chr1 (7 HSPs)
chr1 (64-567)||(46397774-46398266)
chr1 (124-268)||(33368975-33369114)
chr1 (364-422)||(23206306-23206363)
chr1 (62-116)||(33369145-33369199)
chr1 (507-567)||(29096172-29096232)
chr1 (368-412)||(33368779-33368823)
chr1 (376-422)||(29096227-29096273)
[»] scaffold0274 (2 HSPs)
scaffold0274 (500-567)||(14430-14497)
scaffold0274 (389-422)||(14409-14442)


Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 363 - 829
Target Start/End: Complemental strand, 17068305 - 17067841
Alignment:
Q  363 ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatatt 462  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  17068305 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatatt 17068206  T
Q  463 aattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcg 561  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17068205 aattgcccgatacttttccgatacctgtatcgggacgtatcgaggcgtattggtatcggatacgtgtcagatacgatacttcaccatttttggagtatcg 17068106  T
Q  562 gggcttgagagagagaatagctcactaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcgggctgtactaaatg 661  Q
    |||||| |   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17068105 gggcttca---agagaatagctcattaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcggactgcactaaatg 17068009  T
Q  662 ttcaaagagcagctttacattttcactcgactgctattgctggtacggtaattaacatattgctttcaattaaagcacatctcagcatttctcaataact 761  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17068008 ttcaaagagcagctttacattttcacccgactgctattgctggtacggtaattaacatattgctttcaattaaagcacatctcagcatttctcaataact 17067909  T
Q  762 taataacatacacgttttatatattagcatttttgagttcaactgacttttggttgcagatcctgata 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17067908 taataacatacacgttttatatattagcatttttgagttcaactgacttttggttgcagatcctgata 17067841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 363 - 829
Target Start/End: Original strand, 17580052 - 17580516
Alignment:
Q  363 ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatatt 462  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  17580052 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatatt 17580151  T
Q  463 aattgcccgatacttt-ccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcg 561  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17580152 aattgcccgatacttttccgatacctgtatcgggacgtatcgaggcgtattggtatcggatacgtgtcagatacgatacttcaccatttttggagtatcg 17580251  T
Q  562 gggcttgagagagagaatagctcactaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcgggctgtactaaatg 661  Q
    |||||| |   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  17580252 gggcttca---agagaatagctcattaccaatttgatcatttgattaatgtttccttccttataaacaactacaggaaaagtttcggactgcactaaatg 17580348  T
Q  662 ttcaaagagcagctttacattttcactcgactgctattgctggtacggtaattaacatattgctttcaattaaagcacatctcagcatttctcaataact 761  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17580349 ttcaaagagcagctttacattttcacccgactgctattgctggtacggtaattaacatattgctttcaattaaagcacatctcagcatttctcaataact 17580448  T
Q  762 taataacatacacgttttatatattagcatttttgagttcaactgacttttggttgcagatcctgata 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17580449 taataacatacacgttttatatattagcatttttgagttcaactgacttttggttgcagatcctgata 17580516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 29055012 - 29054462
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn---gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaa 114  Q
    |||||||| |||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  29055012 attagtactatccaaagagaacatcataagtactataaaaaaaaaagaacatctttgtctaatgttgactacttaaccgttaacactaatttatatcgaa 29054913  T
Q  115 aacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagcta--ttgctatgtg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  29054912 aacaaacagcagaagaaacataacattagagagaagagaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattttgctatgtg 29054813  T
Q  213 gtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcgg 312  Q
    ||||||||||||||||        ||||||||||||| ||||||||||||||| |||||| | ||||||||||||| |||||||||||||||| ||||||    
T  29054812 gtgacgagaaacccta--ttttttaggttagaagagacaatatgattttgataacgctgccaaacttgataggtgttggagtataagtaagctgtgtcgg 29054715  T
Q  313 agtacaagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtat 411  Q
    |||||||||||||||||||        |||||||||| |||||        ||||||| ||||||||||||| |||  |||||||| || ||||||||||    
T  29054714 agtacaagttagtcgtatc--------cgacacgtataggtcattttttttccttcaataaataaatattaactgtctgatacttcaccaatacgcgtat 29054623  T
Q  412 cgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgta 510  Q
    |||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  29054622 cgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcgggacgtatcgaggcgta 29054523  T
Q  511 tcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  29054522 tc-gtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttgagag 29054462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 21076416 - 21075900
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||    
T  21076416 attagtaccatccaaagagaacatcataagtactataaaaaaagaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaac 21076317  T
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21076316 aaacaacataagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 21076217  T
Q  218 gagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtac 317  Q
    |||||||||||        ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  21076216 gagaaacccta-tttttttaggttagaaaagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtac 21076118  T
Q  318 aagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggga 416  Q
    ||||||||||||||        ||||||||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||||||||         
T  21076117 aagttagtcgtatc--------cgacacgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtat----- 21076031  T
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggt 515  Q
                    |||||||||||||||       ||||||||||||||||||||| ||||||||| | |||||||||          |||||||||    
T  21076030 ----------------cggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatagccgtatcggga----------cgtatcggt 21075957  T
Q  516 atcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  21075956 atccgatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 21075900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 17630791 - 17631261
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn---gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaa 114  Q
    ||||||||||||||||||||||||| ||||||||||          |||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  17630791 attagtaccatccaaagagaacatcgtaagtactataaaaaaaaaagaacatatttgtctaatgttgactacttaacagttaacactaatttatatcgaa 17630890  T
Q  115 aacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggt 214  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17630891 aactaacagcagaataaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatttggt 17630990  T
Q  215 gacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggag 314  Q
    ||||||||||||||        ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||    
T  17630991 gacgagaaacccta-tttttttaggttagaagagacaatatgattttgatagcgttgccagacttgataggtgtcggagtataagtaagctgtgtcggag 17631089  T
Q  315 tacaagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcg 413  Q
    |||||||||||||||||        ||||||||||||||||        ||||||||||||||||||||| ||           |||||||| |||||||    
T  17631090 tacaagttagtcgtatc--------cgacacgtatcggtcattttttttccttcaaaaaataaatattaactg-----------tccgatacacgtatcg 17631170  T
Q  414 ggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcg 503  Q
    ||||||||| ||||||||||||||||||||||||       ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||    
T  17631171 ggacgtatctgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcctgatacttttccgatacccgtatcgggacgtatcg 17631261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 20289786 - 20289270
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||    
T  20289786 attagtaccatccaaagagaacatcataagtactataaaaaaagaacatctttgtctaatgttaattacttaacggttaacactaatttatatcgaaaac 20289687  T
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  20289686 aaacaacataagaaacataacattagagagaagagaaacagagtagaattcaattagtgttaatggttagaagagagaatagctattgctatgtggtgac 20289587  T
Q  218 gagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtac 317  Q
    |||||||||||        ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  20289586 gagaaacccta-tttttttaggttagaaaagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagtac 20289488  T
Q  318 aagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggga 416  Q
    ||||||||||||||        ||||||||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||||||||         
T  20289487 aagttagtcgtatc--------cgacacgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtat----- 20289401  T
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggt 515  Q
                    |||||||||||||||       ||||||||||||||||||||| ||||||||| | |||||||||          |||||||||    
T  20289400 ----------------cggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatagccgtatcggga----------cgtatcggt 20289327  T
Q  516 atcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  20289326 atccgatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 20289270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 151 - 572
Target Start/End: Original strand, 10861549 - 10861952
Alignment:
Q  151 agaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagat 250  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||     
T  10861549 agaaacatagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctatattttt-aggttagaagagag 10861647  T
Q  251 aatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatc 350  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||    
T  10861648 aatatgattttgagagcgctgccagacctgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacg--------tatc 10861739  T
Q  351 ggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnn 450  Q
    |||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       
T  10861740 ggtcatttttttccttcaaaaaataaatattaattgtccgatacttctccgatacgcgtatcggcacgtatccgacacgtatcggtcattgtttttcaaa 10861839  T
Q  451 nnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatt 549  Q
        |||||||||||||||| |||| ||||||||||| ||||||| |           |||||||||||||||| ||||| | | |||||||||||||||    
T  10861840 aaaataaatattaattgcccaatacttttccgatacccgtatcggaa----------tgtatcggtatcggatatgtgtcggttacgatacttcaccatt 10861929  T
Q  550 tttggagtatcggggcttgagag 572  Q
    |||||||||||||||||| ||||    
T  10861930 tttggagtatcggggcttcagag 10861952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 17068622 - 17068340
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17068622 attagtatcatccaaagagaacatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaa 17068523  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17068522 caaacagcagaagaaacataacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 17068423  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagt 300  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17068422 cgagaaacccta-tttttttaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtacaagt 17068340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 17579651 - 17579933
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17579651 attagtatcatccaaagagaacatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaa 17579750  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17579751 caaacagcagaagaaacataacattagagagaagagaaacagagtaaaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 17579850  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagt 300  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17579851 cgagaaacccta-tttttttaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtacaagt 17579933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 34964377 - 34964843
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn---gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaa 114  Q
    ||||||| |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  34964377 attagtatcatccaaagagaacatcataagtactacataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttacatcgaa 34964476  T
Q  115 aacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggt 214  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||| |||    
T  34964477 aacaaacagcagaataaacataacattagagagaagagaaacatagtagaattcaatcaaaggtaatggttagaagagagaatagctattgctatgcggt 34964576  T
Q  215 gacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggag 314  Q
    ||||||||||||||        ||||||||||||           ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||    
T  34964577 gacgagaaacccta-tttttttaggttagaagag-----------ttgatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcggag 34964664  T
Q  315 tacaagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcg 413  Q
    |||||||||||||||||        |||||| |||||||||        |||||||||||||||||||||   | ||||||||||||||||||| |||||    
T  34964665 tacaagttagtcgtatc--------cgacacatatcggtcattttttttccttcaaaaaataaatattaaccatccgatacttctccgatacgcatatcg 34964756  T
Q  414 ggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcg 503  Q
    ||    ||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||| ||||||| ||| ||||    
T  34964757 gg----atccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggaacgtatcg 34964843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 10861438 - 10861557
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  10861438 attagtaccatccaaagagaacatcataagtactataagaaaaagaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaa 10861537  T
Q  117 caaacagcagaagaaacata 136  Q
    ||||||||||||||||||||    
T  10861538 caaacagcagaagaaacata 10861557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 363 - 447
Target Start/End: Original strand, 17579968 - 17580052
Alignment:
Q  363 ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc 447  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17579968 ccttcaaaaaataaatattaactgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattttttttc 17580052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 482 - 573
Target Start/End: Original strand, 10786846 - 10786937
Alignment:
Q  482 atacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagaga 573  Q
    ||||||||||||||||| || | ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  10786846 atacctgtatcgggacgtattggggcgtctcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttgagaga 10786937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 127 - 272
Target Start/End: Original strand, 3046537 - 3046681
Alignment:
Q  127 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 226  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| | ||||||||||||||||||||    
T  3046537 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgttatgtggtgacgagaaaccc 3046636  T
Q  227 tannnnnnnnaggttagaagagataatatgattttgatagcgctgc 272  Q
    ||         |||||||||||| |||||| |||||||||||||||    
T  3046637 tatttttttg-ggttagaagagacaatatgtttttgatagcgctgc 3046681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 3046400 - 3046507
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaa---catctttgtctaatgttgactacttaacagttaacactaatttatatagaa 114  Q
    ||||||||||||||||||||||||||||||||||||        ||   || |||||||||||||||||||||||| | |||||||||||||||||  ||    
T  3046400 attagtaccatccaaagagaacatcataagtactataaaaaaaaaataacacctttgtctaatgttgactacttaatatttaacactaatttatatcaaa 3046499  T
Q  115 aacaaaca 122  Q
    ||||||||    
T  3046500 aacaaaca 3046507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 3046830 - 3046884
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||    
T  3046830 aaaaaataaatattaattgcccaatacttctccgatacacgtatcgggacgtatc 3046884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 44718711 - 44718762
Alignment:
Q  364 cttcaaaaa-ataaatattaattgttcgatacttctccgatacgcgtatcgg 414  Q
    ||||||||| |||||||||||| | |||||||||||||||||||| ||||||    
T  44718711 cttcaaaaagataaatattaatcgatcgatacttctccgatacgcatatcgg 44718762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 338
Target Start/End: Original strand, 3046756 - 3046810
Alignment:
Q  284 ggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacg 338  Q
    ||||||||||||||| | |||| ||||||||||||||||||  ||||| ||||||    
T  3046756 ggtgtcggagtataaattagctgtgtcggagtacaagttagctgtatcagacacg 3046810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 44718251 - 44718301
Alignment:
Q  69 ttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaa 119  Q
    |||||||||||||||||||||| ||||||||||| || | || ||||||||    
T  44718251 ttgtctaatgttgactacttaatagttaacactatttgaaattgaaaacaa 44718301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 567
Target Start/End: Original strand, 37681 - 38223
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37681 attagtaccatccaaagagaacatcataagtactataaaaaaatgaacatctttgtctaatgttgactacttaacagttaacacaaatttatatcgaaaa 37780  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  37781 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagcggtaatggttagaagagaaaatagctattgctatgtggtga 37880  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||||||||        |||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||    
T  37881 cgagaaacccta-tttttttaggttaaaagagacaatatgattttgatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagta 37979  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggga 416  Q
    |||||||||||||||        ||||||||||||||||       ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  37980 caagttagtcgtatc--------cgacacgtatcggtcatttttttccttcaaaaaataaatattaactgtccgatacttctccgatacgcgtattggga 38071  T
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggt 515  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||| |||||| ||||||||||| |||| |||||||||||    
T  38072 cgtatccgacacgtatcggtcattgtttttttaagaaataaatattaattgcccgatacttttctgatacccgtatcgggacgtatcggggcgtatcggt 38171  T
Q  516 atcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 567  Q
    ||| |||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  38172 atcagatacgtgtcggatacgatacttcatcatttttggagtatcggggctt 38223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 314; Significance: 1e-176; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 18 - 573
Target Start/End: Complemental strand, 14811723 - 14811174
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    |||| ||||||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14811723 attattaccatccaaagagaacatgataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaa 14811624  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    ||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14811623 caaacaatagaagaaacataacattagagagaagagaaatagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 14811524  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||| ||||        ||||||||||||| ||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  14811523 cgagaaatccta-tttttttaggttagaagagacaatatgattttaatagtgctgccagacttaataggtgtcggagtataagtaagctgtgtcggagta 14811425  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    |||||||||||||||        ||||||||||||||||        ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  14811424 caagttagtcgtatc--------cgacacgtatcggtcattttttttccttcaaaaaataaatattaattgtccgatatttctccgatacacgtatcggg 14811333  T
Q  416 acgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcgg 514  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||  ||||||||||| |||| ||||||||||    
T  14811332 acgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcggggcgtatcgg 14811233  T
Q  515 tatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagaga 573  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| |||||    
T  14811232 tatcggatacgtgtcggatacgatacttcaccatttttgaagtgtcggggcttcagaga 14811174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 14314016 - 14314562
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn---gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaa 114  Q
    ||||||| ||||||||||||||||||||||||||||          |||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  14314016 attagtatcatccaaagagaacatcataagtactataaaaaaaaaagaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaa 14314115  T
Q  115 aacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaata-------gctattgct 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||       |||||||||    
T  14314116 aacaaacagca-aagaaacataacattagagagaagagaaacaaagtagaattcaatcaccggtaatggttagaagagagaataactattggctattgct 14314214  T
Q  208 atgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctct 307  Q
    |||||||||||||||||||||        ||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||||| |    
T  14314215 atgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatagcgcagccagacttgataggtgttggagtataagtaagctgt 14314313  T
Q  308 gtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgc 407  Q
    |||||||| |||||||||||||||        ||||||||||||||||       ||||||||||||||||||||||||  ||||||||||||||||||     
T  14314314 gtcggagtgcaagttagtcgtatc--------cgacacgtatcggtcatttttttccttcaaaaaataaatattaattgcccgatacttctccgatacg- 14314404  T
Q  408 gtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgagg 506  Q
             |||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||  ||||||||||| |||| ||    
T  14314405 ---------cgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacgcgtatcgggacgtatcgggg 14314495  T
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagaga 573  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||    
T  14314496 cgtatcggtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggctttagaga 14314562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 27709937 - 27709996
Alignment:
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggct 566  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||    
T  27709937 cgtatcggtatcggatacgtgtcagacacgattcttcaccatttttggagtatcggggct 27709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 13043622 - 13043666
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaattc 168  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  13043622 cagaagaaacataacattagagagaagagaaacatagtagaattc 13043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 29081213 - 29081152
Alignment:
Q  167 tcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 228  Q
    |||||| ||||||||||||||||||| ||||| ||||||||  ||||||||||| |||||||    
T  29081213 tcaatcggtggtaatggttagaagagggaataactattgctcggtggtgacgaggaacccta 29081152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 507 - 572
Target Start/End: Original strand, 32751109 - 32751174
Alignment:
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||||||||||||||||||||||| |||   || ||||||||||||||||||||||| |||| ||||    
T  32751109 cgtatcggtatcggatacgtgtcggatataattcttcaccatttttggagtatcggagcttcagag 32751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 13043503 - 13043563
Alignment:
Q  62 aacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaaca 122  Q
    |||||| ||||||||||||||| |||||| | |||||||||||| | || |||||||||||    
T  13043503 aacatcattgtctaatgttgaccacttaatacttaacactaattgagattgaaaacaaaca 13043563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 309; Significance: 1e-173; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 39580340 - 39579803
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39580340 attagtaccatccaaagagaacatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaa 39580241  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  39580240 caaacagcagaagaaacataacattagagagaagagaaacaaagtagaattcaatcagtggtaatggttggtagagagaatagctattgctatgtggtga 39580141  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||||||||        ||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||    
T  39580140 cgagaaacccta-tttttttaggttagaagagacattatgattttgatagcgctgccagagttgataggtgtcggagtataagtaagctgtgccggagta 39580042  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggga 416  Q
    |||||||||||||||        ||||||||||||||||       | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  39580041 caagttagtcgtatc--------cgacacgtatcggtcatttttttctttcaaaaaataaatattaattgtccgatacttctccgatacgcatatcggga 39579950  T
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggt 515  Q
    |||||||||||||||| ||||||||||||||       ||||||||||||||||||||| ||||||||||| |||||||||          |||||| ||    
T  39579949 cgtatccgacacgtattggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggga----------cgtatcagt 39579860  T
Q  516 atcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  39579859 atcagatacgtgtcagatacgatacttcaccatttttggagtatcggggcttcagag 39579803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 18 - 573
Target Start/End: Complemental strand, 4533922 - 4533370
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn------gaacatctttgtctaatgttgactacttaacagttaacactaatttatata 111  Q
    |||||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||||| ||||||||||||| ||||||||||     
T  4533922 attagtaccatccaaagataacatcataagtactataaaaaaaaaaaaagaacatctttgtctaatgttgactaattaacagttaacaataatttatatc 4533823  T
Q  112 gaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgt 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  4533822 gaaaacaaacagcaaaagaaacataacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgttatgt 4533723  T
Q  212 ggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcg 311  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||    
T  4533722 ggtgacgagaaacccta-ttattttaggttagaagagataatatgattttgatagcgctgccaaacttgataggtgtcggagtataagtaagctgtgtcg 4533624  T
Q  312 gagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtat 411  Q
    ||||||||||||||||||||         ||| |||||||||||       ||||||||||||||||| |||||||  ||||||||| ||||||||||||    
T  4533623 gagtacaagttagtcgtatc--------tgacgcgtatcggtcatttttttccttcaaaaaataaataataattgtctgatacttct-cgatacgcgtat 4533533  T
Q  412 cgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgta 510  Q
    ||| ||||||||||||| ||||||||||||||||||       ||||||||||||||||||||| ||||||||||| ||||||| ||| ||||  |||||    
T  4533532 cggaacgtatccgacacatatcggtcattgtttttcaaaaaaataaatattaattgcccgatacttttccgatacccgtatcggaacgtatcggagcgta 4533433  T
Q  511 tcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagaga 573  Q
    |||||||| |||||||||| ||| ||||||||||||||||| | ||||||| ||||| |||||    
T  4533432 tcggtatcagatacgtgtcggatacgatacttcaccattttcgaagtatcgcggcttcagaga 4533370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 62 - 494
Target Start/End: Complemental strand, 959237 - 958813
Alignment:
Q  62 aacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 161  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  959237 aacatctttgtctaatgttgactacttaacggttatcactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 959138  T
Q  162 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgatttt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||| |||||||||||    
T  959137 agaattcaatcagtggtaatggttagaagagagaatagctatttctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgatttt 959039  T
Q  262 gatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnn 361  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||        ||||||||||| ||||          
T  959038 gatagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatc--------cgacacgtatcagtcatttttt 958947  T
Q  362 nccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatat 461  Q
     ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  958946 tccttcaaaaaataaatattaaatgtttgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaatataaatat 958847  T
Q  462 taattgcccgatac-tttccgatacctgtatcgg 494  Q
    |||||||||||||| ||||||||||| |||||||    
T  958846 taattgcccgatacttttccgatacccgtatcgg 958813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 25041785 - 25041311
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    |||||| |||||| || | |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25041785 attagtgccatcctaacaaaacatcataagtactataaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaac 25041686  T
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||    
T  25041685 aaacagcagaagaaacataacattagagagaagagaaacagagtagaatttaatcagtggtaatggttaaaaaagagaatagctattgctatgtggtgac 25041586  T
Q  218 gagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtac 317  Q
    |||||||||||        ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  25041585 gagaaaccctattttttttaggttagaagagacaatatgattttgatagcgcagccagacttgataggtgtcggagtataagtaagctgtgtcggagtac 25041486  T
Q  318 aagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggga 416  Q
    ||||||||||||||        ||||||||||| ||||         |||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  25041485 aagttagtcgtatc--------cgacacgtatcagtcattttatttacttcaaaaaataaatattaattgtccgatacttctccaatacgcgtattggga 25041394  T
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacg 498  Q
    |||||||||||||||||||||||||||||||       |||||||||||||| |||||| |||| |||||  |||||||||||    
T  25041393 cgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgcgcgatacttttctgatactcgtatcgggacg 25041311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 112 - 572
Target Start/End: Complemental strand, 39674529 - 39674088
Alignment:
Q  112 gaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  39674529 gaaaacaaacagcagaagaaacataacattagagagaagagaaacggagtagaattcaatcagtggtaatg--tagaagagagaatagctattgctatgt 39674432  T
Q  212 ggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcg 311  Q
    |||||||||||||||||        ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||| | |||||    
T  39674431 ggtgacgagaaacccta-tttttttaggttagaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagttgtgtcg 39674333  T
Q  312 gagtacaagttagtcgtatccgacacggcgacacgtatcggtc-annnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgta 410  Q
    ||||||||||||||||||||        |||||||||||||||         ||||||||||||||||||||| ||| |||||||| | |||||||||||    
T  39674332 gagtacaagttagtcgtatc--------cgacacgtatcggtctttttttttccttcaaaaaataaatattaactgtccgatacttttgcgatacgcgta 39674241  T
Q  411 tcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgt 509  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||| |||||| |||||||||          | |    
T  39674240 tcgggacgtatccgacacgtatcggtcattgttttttaaaaaaataaatattaattgcccgatacttttctgatacccgtatcggga----------cat 39674151  T
Q  510 atcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||    
T  39674150 atcggtatcgaatacgtgtcggatacgatacttcaccatttttgaagtatcggggcttcagag 39674088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 42864712 - 42864321
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||| ||||||||||        |||||||||||||||||| |||||||||||||     || |||||||||| |||||    
T  42864712 attagtaccatccaaagagaacatc-taagtactataaaaaaaagaacatctttgtctaatggtgactacttaacat----cagtaatttatatcgaaaa 42864618  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42864617 caaacagcagaagaaacataacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtga 42864518  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||||||||        ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  42864517 cgagaaacccta-tttttttaggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagta 42864419  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    |||||||||||||||        ||||| ||||||||||        ||||||||||||||||||||| ||| |||||||||||||||||  || |||||    
T  42864418 caagttagtcgtatc--------cgacatgtatcggtcattttttttccttcaaaaaataaatattaactgtccgatacttctccgatacaagtgtcggg 42864327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 118 - 572
Target Start/End: Original strand, 53330421 - 53330860
Alignment:
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53330421 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53330520  T
Q  218 gagaaacccta-nnnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    |||||||||||           ||||||||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||    
T  53330521 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53330620  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    |||||||||||||||        ||||||||||||| ||        ||||||||||||||||||||| ||  |||| ||| || |||||||||||||||    
T  53330621 caagttagtcgtatc--------cgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcggg 53330712  T
Q  416 acgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcgg 514  Q
    |||||| |||||||||| ||||||||||||||       ||||||||||||| ||||||| ||||||||||           || |||||||||||||||    
T  53330713 acgtattcgacacgtattggtcattgtttttcaaaaaaataaatattaattgtccgatacttttccgatac----------gcgtatcgaggcgtatcgg 53330802  T
Q  515 tatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  53330803 tatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53330860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 118 - 572
Target Start/End: Original strand, 53334105 - 53334544
Alignment:
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53334105 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53334204  T
Q  218 gagaaacccta-nnnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    |||||||||||           ||||||||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||    
T  53334205 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53334304  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    |||||||||||||||        ||||||||||||| ||        ||||||||||||||||||||| ||  |||| ||| || |||||||||||||||    
T  53334305 caagttagtcgtatc--------cgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcggg 53334396  T
Q  416 acgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcgg 514  Q
    |||||| |||||||||| ||||||||||||||       ||||||||||||| ||||||| ||||||||||           || |||||||||||||||    
T  53334397 acgtattcgacacgtattggtcattgtttttcaaaaaaataaatattaattgtccgatacttttccgatac----------gcgtatcgaggcgtatcgg 53334486  T
Q  515 tatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  53334487 tatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53334544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 118 - 572
Target Start/End: Original strand, 53337782 - 53338221
Alignment:
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53337782 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgac 53337881  T
Q  218 gagaaacccta-nnnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    |||||||||||           ||||||||||| |||||||||||| ||||||| | |||||||||||||||| ||||||||||||||| ||||||||||    
T  53337882 gagaaaccctatttttttttttgttagaagagacaatatgattttggtagcgcttccagacttgataggtgtccgagtataagtaagctgtgtcggagta 53337981  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    |||||||||||||||        ||||||||||||| ||        ||||||||||||||||||||| ||  |||| ||| || |||||||||||||||    
T  53337982 caagttagtcgtatc--------cgacacgtatcggacattttttttccttcaaaaaataaatattaactgcccgatgcttttctgatacgcgtatcggg 53338073  T
Q  416 acgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcgg 514  Q
    |||||| |||||||||| ||||||||||||||       ||||||||||||| ||||||| ||||||||||           || |||||||||||||||    
T  53338074 acgtattcgacacgtattggtcattgtttttcaaaaaaataaatattaattgtccgatacttttccgatac----------gcgtatcgaggcgtatcgg 53338163  T
Q  515 tatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  53338164 tatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53338221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 21869301 - 21869148
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaa-catctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21869301 attagtaccatccaaagagaacatcataagtactataaaaaaaaaaacatctttgtctaatgttgactacttaacagttaacactaatttatattgaaaa 21869202  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21869201 caaacagcagaagaaacataacattagagagaagagaaacatagtagaattcaa 21869148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 22976519 - 22976673
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 223  Q
    ||||||||||||  |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  22976519 cagaagaaacatggcattagagagaaaagaaacatagtagaattcaatcggtggtaatggttagaagaggaaatagctatcgctatgtggtgacgagaaa 22976618  T
Q  224 ccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttg 280  Q
    |||||         ||||| |||||| |||||| ||||||||||||||| |||||||    
T  22976619 ccctattttttg--ggttaaaagagacaatatgtttttgatagcgctgctagacttg 22976673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 455 - 572
Target Start/End: Complemental strand, 42864368 - 42864250
Alignment:
Q  455 taaatattaattgcccgatactt-tccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttg 553  Q
    |||||||||| || ||||||||| ||||||||  || |||||||| || | ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42864368 taaatattaactgtccgatacttctccgatacaagtgtcgggacgtattggggcgtatcggtatcggatacgtgtcggatacgatacttcaccatttttg 42864269  T
Q  554 gagtatcggggcttgagag 572  Q
    |||| ||||||||| ||||    
T  42864268 gagtttcggggcttcagag 42864250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 22976389 - 22976493
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    |||||||| |||||||||||||||||||||||||||        |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||     
T  22976389 attagtactatccaaagagaacatcataagtactataaaaaaa-aacacctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaat 22976487  T
Q  118 aaacag 123  Q
    ||||||    
T  22976488 aaacag 22976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 488 - 572
Target Start/End: Original strand, 53363115 - 53363199
Alignment:
Q  488 gtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||||||||||| |||| || ||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  53363115 gtatcgggacgtatcggggtgtatcggtatcagatacatgtcggatacgatacttcaccatttttggagtatcggggcttcagag 53363199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 29360179 - 29360074
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    |||||||||||||||||||||||||||||||||| |       || ||  ||| ||||||||||||| ||| | |||||||||||||||| || ||||||    
T  29360179 attagtaccatccaaagagaacatcataagtactgtaaaaaaagatcacatttatctaatgttgactgcttgatagttaacactaatttagatcgaaaac 29360080  T
Q  118 aaacag 123  Q
    ||||||    
T  29360079 aaacag 29360074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 567
Target Start/End: Original strand, 27391352 - 27391411
Alignment:
Q  508 gtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 567  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  27391352 gtatcggtatcggatacgtgtcagacacgattcttcaccatttttggagtataggggctt 27391411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 39674604 - 39674532
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaa 90  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||| | |||||||||||||||    
T  39674604 attagtaccatccaaagagaacatcataagtactataaaaaaagaacatctttgtttgatgttgactacttaa 39674532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 41530320 - 41530407
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatt 105  Q
    |||||||||||| ||||||||||| || |||||| |       ||||||| |||||||||||||||||||| | ||||||||||||||    
T  41530320 attagtaccatctaaagagaacattattagtactgtcaaaaaagaacatcattgtctaatgttgactactttatagttaacactaatt 41530407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 959294 - 959259
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactat 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  959294 attagtaccatccaaagagaacatcataagtactat 959259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 25041361 - 25041308
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtat 421  Q
    |||||||||||||||||||  |||||||| || ||||| |||||||||||||||    
T  25041361 aaaaaataaatattaattgcgcgatacttttctgatactcgtatcgggacgtat 25041308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 29359846 - 29359793
Alignment:
Q  284 ggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacac 337  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||||||||    
T  29359846 ggtgtcggagtataagttacccgtgtcggagtacaagttagccgtatccgacac 29359793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 29360047 - 29360014
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaaca 157  Q
    ||||||||||||||||||||||||||||||||||    
T  29360047 cagaagaaacataacattagagagaagagaaaca 29360014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 53330383 - 53330418
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactat 53  Q
    ||||||||||||||||||||||| ||||||||||||    
T  53330383 attagtaccatccaaagagaacaacataagtactat 53330418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 53334067 - 53334102
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactat 53  Q
    ||||||||||||||||||||||| ||||||||||||    
T  53334067 attagtaccatccaaagagaacaacataagtactat 53334102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 53337744 - 53337779
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactat 53  Q
    ||||||||||||||||||||||| ||||||||||||    
T  53337744 attagtaccatccaaagagaacaacataagtactat 53337779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 573
Target Start/End: Complemental strand, 30948006 - 30947455
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  30948006 attagtaccatccaaagagaacatcataagtactataaaaaaaagaacatctttgtctaatgttgactatttaacagttaacactaatttatatcgaaaa 30947907  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    ||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30947906 caaacggcagaagaaacataacatc-gagagaagagaaacatagtagaattcaatcggtggtaatggttagaagagagaatagctattgctatgtggtga 30947808  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||||||||        || |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  30947807 cgagaaacccta-tttttttagattagaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagctgtgtcggagta 30947709  T
Q  317 ca----agttagtcgtatccgacacggcgacacgtatcggtcannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatc 412  Q
    ||    |||||||||||||        ||||||||||| ||||       |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  30947708 caagttagttagtcgtatc--------cgacacgtatcagtcatttttttccttcaaaaaataaatattaattgtctgatacttctccgatacgcgtatc 30947617  T
Q  413 gggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtat 511  Q
    ||||||||||||||||||||| |||||||||||||       ||||||||||||||||||||| ||| ||||||| ||||||| ||| |||| |||||||    
T  30947616 gggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcccgatactttttcgatacccgtatcggaacgtatcggggcgtat 30947517  T
Q  512 cggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagaga 573  Q
    |||||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||    
T  30947516 cggtatcgaatacgtgtcggatacgatacttcaccatttttgtagtatcggggcttcagaga 30947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 572
Target Start/End: Original strand, 19927885 - 19928419
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    ||||||| ||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  19927885 attagtatcatccaaagagaacatcataagtactataaaaaaagaacatctttatctaatgttgactacttaacagttatcactaatttatatcgaaaac 19927984  T
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19927985 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 19928084  T
Q  218 gagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtac 317  Q
    |||||||| ||        ||||||||||||  | |||||||||||||||||||| |||||||||| |||||   ||||||||||||| |||||||||||    
T  19928085 gagaaaccata-tttttttaggttagaagag--actatgattttgatagcgctgccagacttgataagtgtcaaggtataagtaagctgtgtcggagtac 19928181  T
Q  318 aagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggga 416  Q
    |||||||||||||         | ||||||||||||||        ||||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  19928182 aagttagtcgtat--------tcaacacgtatcggtcattttttttccttcaaaaaataaatattaactgtctgatacttctccgatacgcgtatcggga 19928273  T
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatactttccgatacctgtatcgggacgcatcgaggcgtatcggta 516  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||          |||||||| ||||||||| | ||||  |||||||||||    
T  19928274 cgtatccgacacgtatcggtcattgtttttcaaaaaaataaatattaattgc----------ccgatacccgtatcgggatgtatcggagcgtatcggta 19928363  T
Q  517 tcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  19928364 tcggatacgtgtcggatacgatacttcaccatttttggagtatcggggctttagag 19928419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 61 - 494
Target Start/End: Complemental strand, 25444001 - 25443577
Alignment:
Q  61 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25444001 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaaacaaatagcagaagaaacataacattagagagaagagaaacagag 25443902  T
Q  161 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattt 260  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||         ||||||||||| | ||||||||||    
T  25443901 tagaattcaatctgtggtaatggttagaaaagagaatagctattgatatgtggtgatgagaaaccct-tattttttaggttagaagaaacaatatgattt 25443803  T
Q  261 tgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnn 360  Q
    |||||||||||| ||||||||||||||||||| |||||||||| | ||| ||||||||||||| | |||||        ||||||||||||||||         
T  25443802 tgatagcgctgccagacttgataggtgtcggaatataagtaagatgtgt-ggagtacaagttaattgtatc--------cgacacgtatcggtca-tttt 25443713  T
Q  361 nnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc-nnnnnnntaaat 459  Q
      ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |        |||||    
T  25443712 ttccttcaaaaaataaatattaattgtccgatacttctccgatacgcgtatcgggatgtatctgacacgtatcggtcattgttttacaaaaaaaataaat 25443613  T
Q  460 attaattgcccgatac-tttccgatacctgtatcgg 494  Q
    ||||||||| |||||| ||||||||||| |||||||    
T  25443612 attaattgctcgatacttttccgatacccgtatcgg 25443577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 26279576 - 26279781
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  26279576 attagtaccatccaaagagaacatcataagtactataaaaaaagaacatctttgtccaatgttgactacttaacagttaacattaatttatatcgaaaac 26279675  T
Q  118 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26279676 aaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgttatgtggtgac 26279775  T
Q  218 gagaaa 223  Q
    ||||||    
T  26279776 gagaaa 26279781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 40819561 - 40819768
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||| ||||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||    
T  40819561 attagtatcatccaaagagaacatcataagtactataaaaaaaagaacatctttatctaatgttgactacttaactgttatcactaatttatatcgaaaa 40819660  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40819661 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaataagtggtaatggttagaagagagaatagctattgctatgtggtga 40819760  T
Q  217 cgagaaac 224  Q
    ||||||||    
T  40819761 cgagaaac 40819768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 254 - 572
Target Start/End: Original strand, 40819769 - 40820069
Alignment:
Q  254 atgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggt 353  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||        |||||||    
T  40819769 atgattttgatagcgctgccagacttgataagtgtcggagtataagtaagctgtgttggagtacaagttagtcgtatccgacacg--------tatcggt 40819860  T
Q  354 cannnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnn 453  Q
    ||       | ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  40819861 catttttttc-ttcaaaaaataaatattaactgtccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaa 40819959  T
Q  454 ntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccattttt 552  Q
     |||||||||||| |||||||| ||||||||||| |||||||||          ||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  40819960 ataaatattaatttcccgatacttttccgatacccgtatcggga----------cgtatcggtatcgcatacgtgtcggatacgatacttcaccattttt 40820049  T
Q  553 ggagtatcggggcttgagag 572  Q
    ||||||||||||||| ||||    
T  40820050 ggagtatcggggctttagag 40820069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 279 - 572
Target Start/End: Original strand, 37245166 - 37245443
Alignment:
Q  279 tgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnnn-ccttcaaaaaataaa 377  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||        |||||||||||||||    
T  37245166 tgataggtgtcggagtataagtaagctgtgtcggagtacaagttagtcgtatccgacacg--------tatcggtcattttttttccttcaaaaaataaa 37245257  T
Q  378 tattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatac-t 476  Q
    ||||||||||  ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||       |||| |||||||||||||||| |    
T  37245258 tattaattgtctgatacttttccgatacgcgtatcgcgacgtatctgacacgtatcggtcattgtttttcaaaaaaataaacattaattgcccgatactt 37245357  T
Q  477 ttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||||||||| ||||| |||          |||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  37245358 ttccgatacccgtatcagga----------cgtatcggtatcagatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 37245443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 370 - 572
Target Start/End: Original strand, 26279779 - 26279982
Alignment:
Q  370 aaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcc 469  Q
    |||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||    
T  26279779 aaaataaatattaacttcccgatacttctccgatacgcgtatcgggacgtatccgacacgtatcagtcattgtttttcaaaaaaataaatattaattgcc 26279878  T
Q  470 cgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttg 568  Q
    |||||| |||||||||| |||||||||||| ||||  || |||||||||| |||||||||| ||| |||||||||||||||||| ||||||||||||||     
T  26279879 cgatacttttccgatacgtgtatcgggacgtatcggagcatatcggtatctgatacgtgtcggatacgatacttcaccatttttagagtatcggggcttc 26279978  T
Q  569 agag 572  Q
    ||||    
T  26279979 agag 26279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 22293179 - 22293075
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 223  Q
    |||| ||||||||  ||||||||||||||||||| |||||||||  ||| ||||||||||||||||||| ||||| |||| | ||| |||||||||||||    
T  22293179 cagaggaaacatagtattagagagaagagaaacatagtagaatttgatcggtggtaatggttagaagagggaataactatcgttatatggtgacgagaaa 22293080  T
Q  224 cccta 228  Q
    |||||    
T  22293079 cccta 22293075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 22205102 - 22205173
Alignment:
Q  157 agagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 228  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  22205102 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta 22205173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 22229637 - 22229566
Alignment:
Q  157 agagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta 228  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  22229637 agagtagaattcaatcggcggtaatggttagaagagggaatagctatcgctatttggtgacgagaaacccta 22229566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 37243003 - 37243094
Alignment:
Q  191 agagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgata 283  Q
    ||||||||| ||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  37243003 agagaatagttattgctatgtggtgacgagaaaccctattttttt-aggttagaagagacaatatgattttgatagcgctgccagacttgata 37243094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 45281088 - 45280984
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 223  Q
    |||||||||||| |||||||||  |||||||||| |||||||| ||||  ||| || |||||||||||| ||||| |||| ||| |||||||| ||||||    
T  45281088 cagaagaaacatgacattagagcaaagagaaacatagtagaatacaattggtgatattggttagaagagggaataactatcgctgtgtggtgatgagaaa 45280989  T
Q  224 cccta 228  Q
    |||||    
T  45280988 cccta 45280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 22204964 - 22205059
Alignment:
Q  28 tccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacag 123  Q
    |||||||||||||||| |||||||||       |||||  ||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||    
T  22204964 tccaaagagaacatcacaagtactataaaaaaagaacacttttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22205059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 22229775 - 22229680
Alignment:
Q  28 tccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacag 123  Q
    |||||||||||||||| |||||||||       |||||  ||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||    
T  22229775 tccaaagagaacatcacaagtactataaaaaaagaacacttttgtctaatgttgactacctaatagttaacactaatttatatcgaaaagaaacag 22229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 507 - 572
Target Start/End: Complemental strand, 25443584 - 25443519
Alignment:
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||| ||||    
T  25443584 cgtatcggtatcggatacgtgtcggatacgatacttcaccattttttgagtatcagggcttcagag 25443519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 22293307 - 22293205
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    |||||||||||| ||||||| |||||||||||||||        ||||  ||||||||||||||||||||||| |||||||||||||||| ||  |||||    
T  22293307 attagtaccatctaaagagatcatcataagtactataaaaaa--aacacatttgtctaatgttgactacttaatagttaacactaatttagatcaaaaac 22293210  T
Q  118 aaaca 122  Q
    |||||    
T  22293209 aaaca 22293205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 572
Target Start/End: Original strand, 22205404 - 22205469
Alignment:
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||||||||||||||||||| || ||  |||| |||||||||||||||||||||||||||| ||||    
T  22205404 cgtatcggtatcggatacgtatcggacacgattcttcaccatttttggagtatcggggctttagag 22205469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 572
Target Start/End: Complemental strand, 22229335 - 22229270
Alignment:
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||||||||||||||||||| || ||  |||| |||||||||||||||||||||||||||| ||||    
T  22229335 cgtatcggtatcggatacgtatcggacacgattcttcaccatttttggagtatcggggctttagag 22229270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 45280781 - 45280729
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgta 420  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  45280781 aaaaaataaatattaattgaccgatacttctccaatacgcgtatcgggacgta 45280729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 15043301 - 15043355
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    |||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  15043301 aaaaaataaatattaattggccgatacttcaccgatacacgtatcgggacgtatc 15043355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 422
Target Start/End: Original strand, 26279858 - 26279912
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    |||||||||||||||||||  |||||||| ||||||||| |||||||||||||||    
T  26279858 aaaaaataaatattaattgcccgatacttttccgatacgtgtatcgggacgtatc 26279912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 36630446 - 36630392
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||||||| ||||    
T  36630446 aaaaaataaatattaattgtcagatacttctccgatacacgtatcgggacatatc 36630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 36630305 - 36630251
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    ||||||||||||||||||| | |||||||||||||||| | ||||||||| ||||    
T  36630305 aaaaaataaatattaattgcttgatacttctccgatacacatatcgggacatatc 36630251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 22205352 - 22205409
Alignment:
Q  365 ttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    |||||||||  |||||||||||  |||||||| ||||||||||||||||| |||||||    
T  22205352 ttcaaaaaaataatattaattgcccgatacttttccgatacgcgtatcggaacgtatc 22205409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 22229387 - 22229330
Alignment:
Q  365 ttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    |||||||||  |||||||||||  |||||||| ||||||||||||||||| |||||||    
T  22229387 ttcaaaaaaataatattaattgcccgatacttttccgatacgcgtatcggaacgtatc 22229330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 26244664 - 26244717
Alignment:
Q  69 ttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaaca 122  Q
    |||||||||||||||||||||| | |||||||||||| | || |||||||||||    
T  26244664 ttgtctaatgttgactacttaataattaacactaattgagattgaaaacaaaca 26244717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 36630786 - 36630746
Alignment:
Q  126 gaagaaacataacattagagagaagagaaacagagtagaat 166  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  36630786 gaagaaacataacattagaaagaagagaaacatagtagaat 36630746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 25444054 - 25444019
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactat 53  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25444054 attagtatcatccaaagagaacatcataagtactat 25444019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 503
Target Start/End: Original strand, 15043269 - 15043356
Alignment:
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatactt-tccgatacctgtatcgggacgcatcg 503  Q
    |||||||||||| ||||||||||| ||||||       ||||||||||||| |||||||||  |||||||  ||||||||||| ||||    
T  15043269 cgtatccgacacatatcggtcattttttttcaaaaaaataaatattaattggccgatacttcaccgatacacgtatcgggacgtatcg 15043356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 45280854 - 45280804
Alignment:
Q  288 tcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacg 338  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| ||||||    
T  45280854 tcggagtataagttagccgtgtcagagtacaagttagtcgtatctgacacg 45280804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 45281207 - 45281169
Alignment:
Q  68 tttgtctaatgttgactacttaacagttaacactaattt 106  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  45281207 tttgtctaatgttgactgcttaatagttaacactaattt 45281169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 62 - 573
Target Start/End: Complemental strand, 21112490 - 21111998
Alignment:
Q  62 aacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21112490 aacatctttgtctaatgttgactacttaacagttaacactaatttatatcaaaaacaaacagcagaagaaacataacattagagagaagagaaacagagt 21112391  T
Q  162 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgatttt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||    
T  21112390 agaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaacccta-tttttttaggttagaagagacaatatgatttt 21112292  T
Q  262 gatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnn 361  Q
    ||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||        ||||||||||| ||||          
T  21112291 gatagcgctgccagacttgataggtgtcagagtataagtaagttgtgtcggagtacaagttagtcgtatc--------cgacacgtatcagtcatttttt 21112200  T
Q  362 nccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatat 461  Q
     ||||||||||||||||||||| ||           ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  21112199 tccttcaaaaaataaatattaactg-----------tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatat 21112111  T
Q  462 taattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatc 560  Q
    |||||||||||||| ||||||||||| ||||||||||  |||||||||||||| |||| ||||||| || ||| ||||||||||||||||||||||||||    
T  21112110 taattgcccgatacttttccgatacccgtatcgggacatatcgaggcgtatcgatatccgatacgtatcggatacgatacttcaccatttttggagtatc 21112011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 8862478 - 8861950
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn--gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaa 115  Q
    ||||||||||||||||||||||||||||  ||||||         ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||    
T  8862478 attagtaccatccaaagagaacatcatagttactataaaaaaaaagaacatctttgtctaatgttgaccacttaacagttatcactaatttatatcgaaa 8862379  T
Q  116 acaaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtg 215  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8862378 acaaacagtagaagaaacataacattatagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgcggtg 8862279  T
Q  216 acgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagt 315  Q
    |||||||||||||        ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  8862278 acgagaaacccta-tttttttaggttagaagagacaatatgattttgatagcgctgctagacttgataggtgtcggagtataagtaagctgtgtcggagt 8862180  T
Q  316 acaagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgg 414  Q
    | ||||||||||||||        |||||||||||| | |        ||||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  8862179 ataagttagtcgtatc--------cgacacgtatcgattattttttttccttcaaaaaataaatattaactatccgatacttctccgatacgcgtatcgg 8862088  T
Q  415 gacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgata-ctttccgatacctgtatcgggacgcatcgaggcgtatcg 513  Q
    |           |||||||||||||||||||||       ||||||||||||||||||||  ||||||||||| |||| ||          |||||||||    
T  8862087 g-----------acgtatcggtcattgtttttcaaaaaaataaatattaattgcccgatatttttccgatacccgtattgg----------ggcgtatcg 8862009  T
Q  514 gtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||    
T  8862008 gtatcggatacgtgtcggatacgatacttcaccatttttggagtatcggggcttcagag 8861950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 243 - 572
Target Start/End: Complemental strand, 11382737 - 11382414
Alignment:
Q  243 gaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcga 342  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  11382737 gaagagacaatatgattttgatagcgctgtcagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacg---- 11382642  T
Q  343 cacgtatcggtcannnnnnn-ccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattg 441  Q
        ||||| |||        ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11382641 ----tatcgctcattttttttccttcaaaaaataaatattaattgtccgatacttcttcgatacgcgtatcgggacgtatccgacacgtatcggtcattg 11382546  T
Q  442 tttttcnnnnnnntaaatattaattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatac 540  Q
    ||||||       ||||||||||||| ||||||| |||| |||||| ||||||||| | |||| ||||||||| ||||||||||||||| ||| ||||||    
T  11382545 tttttcaaaaaaataaatattaattgtccgatacttttctgatacccgtatcgggatgtatcggggcgtatcgatatcggatacgtgtctgatacgatac 11382446  T
Q  541 ttcaccatttttggagtatcggggcttgagag 572  Q
    ||||||||||||||||||||||| ||| ||||    
T  11382445 ttcaccatttttggagtatcgggactttagag 11382414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 8871691 - 8871283
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    |||||||||||||||||||||||||||||||||| |        |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8871691 attagtaccatccaaagagaacatcataagtactgtaaaaaaaagaacatttttgtctaatgttgactacttaacagttaacactaatttatatcgaaaa 8871592  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8871591 caaacagcagaagaaacataacattagagagaagagaaacatagtagaattcaattagtggtaatggttagaagagagaatagctattgctatgtggtga 8871492  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||||||||        ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||    
T  8871491 cgagaaacccta-tttttttaggttagaagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataactaagatgtgtcggagta 8871393  T
Q  317 caagttagtcgtatccgacacggcgacacgtatcggtca-nnnnnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    |||||||||||||||        ||||||||||||||||        ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  8871392 caagttagtcgtatc--------cgacacgtatcggtcattttttttccttcaaaaaataaatattaattgtccgatacttctctgatacgcgtatcggg 8871301  T
Q  416 acgtatccgacacgtatc 433  Q
    ||||  ||||||||||||    
T  8871300 acgtgcccgacacgtatc 8871283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 13854324 - 13854644
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn-gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  13854324 attagtaccatccaaagagaacatcataagtactataaaaaaaagaacatctttgtctaatgttgactacttaacagttaacactaatttatatcgaaa- 13854422  T
Q  117 caaacagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtga 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  13854423 caaatagcagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagataatagttattgctatgtggtga 13854522  T
Q  217 cgagaaaccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagta 316  Q
    ||||||||||||        ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  13854523 cgagaaaccctattttttttaggttaggagagacaatatgattttgatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagta 13854622  T
Q  317 caagttagtcgtatccgacacg 338  Q
    ||||||||||||||||||||||    
T  13854623 caagttagtcgtatccgacacg 13854644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 159 - 572
Target Start/End: Complemental strand, 36606480 - 36606086
Alignment:
Q  159 agtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgat 258  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||    
T  36606480 agtagaattcaatcagtgataatggttagaagagagaatagctattgctatgtggtgacgagaaaccctattttttt-aggttagaagagacaatatgat 36606382  T
Q  259 tttgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannn 358  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||        ||||| |||||||       
T  36606381 tttgatagcgctgccagacttgataggtgtcagagtataagtaagctgtgtcggagtacaagttagtcgtatccga--------cacgtgtcggtca-tt 36606291  T
Q  359 nnnnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaa 458  Q
        |||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||       ||||    
T  36606290 ttttccttaaaaaaataaatattaattgtccgatacttctccgacacgcatatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaa 36606191  T
Q  459 tattaattgcccgata-ctttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagt 557  Q
    |||||||| || ||||  ||||||||||| |||||||||          ||||||| ||||||||||||||  ||| ||||||||||||||||||||| |    
T  36606190 tattaatttcctgatatttttccgatacccgtatcggga----------cgtatcgatatcggatacgtgtaggatacgatacttcaccatttttggaat 36606101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 6666009 - 6665857
Alignment:
Q  127 aagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccc 226  Q
    |||||||||  ||||||||  |||||||||| |||||||||||||  ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||    
T  6666009 aagaaacatggcattagagcaaagagaaacatagtagaattcaattggtggtaatggttagaagagggaatagttatcgctatgtggtgacgagaaaccc 6665910  T
Q  227 tannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttg 280  Q
    ||         |||||||||||| |||||| ||||||||||||||| |||||||    
T  6665909 tatttttttg-ggttagaagagacaatatgtttttgatagcgctgccagacttg 6665857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 124 - 280
Target Start/End: Complemental strand, 32659224 - 32659069
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 223  Q
    |||||||||||||||||||||| || |||||||  |||||||||||||||   ||||||| |||||||  |||||||||| |||||||||||||||||||    
T  32659224 cagaagaaacataacattagagggaggagaaacttagtagaattcaatcataagtaatgggtagaagatggaatagctatcgctatgtggtgacgagaaa 32659125  T
Q  224 ccctannnnnnnnaggttagaagagataatatgattttgatagcgctgcgagacttg 280  Q
    |||||         |||||||||||| |||||| ||||||||||| ||| |||||||    
T  32659124 ccctatattttgg-ggttagaagagacaatatgtttttgatagcgttgccagacttg 32659069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 6666143 - 6666038
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||        || | |||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  6666143 attagtaccatccaaagagaacatcataagtactatataaaaaaaaaacctttgtctaatgttgactacttactagttaacactaatttatatcgaaaac 6666044  T
Q  118 aaacag 123  Q
    ||||||    
T  6666043 aaacag 6666038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 36606588 - 36606474
Alignment:
Q  18 attagtaccatccaaagagaacatcataagtactatnnnnnnn----gaacatctttgtctaatgttgactacttaacagttaacactaatttatataga 113  Q
    ||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||| ||||||||||||  |    
T  36606588 attagtaccatccaaagagaacatcataagtactataaaaaaaaaaagaacatctttgtctaatgttgactacttaacagttaatactaatttatattaa 36606489  T
Q  114 aaacaaacagcagaa 128  Q
    |||||||||| ||||    
T  36606488 aaacaaacagtagaa 36606474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 417 - 572
Target Start/End: Complemental strand, 6665776 - 6665622
Alignment:
Q  417 cgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatattaattgcccgatactt-tccgatacctgtatcgggacgcatcgaggcgtatcggt 515  Q
    |||||||||||||||||||| ||| ||||||        ||||||||||||| |||||||| ||||||||  |||| |||||| |||| |||||||||||    
T  6665776 cgtatccgacacgtatcggtaattttttttcaaaaaa--aaatattaattgctcgatacttctccgatacgcgtattgggacgtatcggggcgtatcggt 6665679  T
Q  516 atcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||| ||||||||| ||  |||| |||||||||||| ||||||||||||||| ||||    
T  6665678 atcgaatacgtgtcggacacgatccttcaccattttcggagtatcggggcttcagag 6665622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 6665745 - 6665692
Alignment:
Q  369 aaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||    
T  6665745 aaaaaaaaatattaattgctcgatacttctccgatacgcgtattgggacgtatc 6665692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 32659313 - 32659258
Alignment:
Q  61 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  32659313 gaacacctttgtctaatgttgactacttaatagttaacactaatttagataaaaaa 32659258  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 8871289 - 8871240
Alignment:
Q  523 acgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||| ||||||  |||||||||| ||||||||||||||||||||||||||    
T  8871289 acgtatcagatatgatacttcacaatttttggagtatcggggcttgagag 8871240  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 30131211 - 30131252
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaa 165  Q
    ||||||||||||| |||||||||||||||||| | |||||||    
T  30131211 cagaagaaacatagcattagagagaagagaaataaagtagaa 30131252  T

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Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 61 - 478
Target Start/End: Complemental strand, 54260528 - 54260130
Alignment:
Q  61 gaacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 160  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54260528 gaacatctttgtctaatgttgactacttaatagttaacactaatttatatcgaaaacaaacagcagaagaaacataacattagagagaagagaaacagag 54260429  T
Q  161 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||| ||||||||||    
T  54260428 tagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaaccta-tttttttaggttagaagagacaatatgattt 54260330  T
Q  261 tgatagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnn 360  Q
    |||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||        ||||||||||||||||         
T  54260329 tgatagcgctgccagacttgataggtgtcggagtataagtaagttgtgtcggagtacaagttagtcgtatc--------cgacacgtatcggtcattttt 54260238  T
Q  361 nnccttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttc-nnnnnnntaaat 459  Q
      ||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  54260237 ttccttcaaaaaataaatattaattg-----------tccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaaataaat 54260149  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 500 - 572
Target Start/End: Original strand, 563343 - 563415
Alignment:
Q  500 atcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggcttgagag 572  Q
    |||| ||||||||||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||| ||||    
T  563343 atcggggcgtatcggtatcggatatgtgtcagatacgattcttcgcgatttttggagtatcggggctttagag 563415  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 26261628 - 26261550
Alignment:
Q  21 agtaccatccaaagagaacatcataagtactatnnnnnnngaacatctttgtctaatgttgactacttaacagttaaca 99  Q
    |||||||||||||||||||||||| ||||||||       ||||||| |||||||||||||||||||||| | ||||||    
T  26261628 agtaccatccaaagagaacatcattagtactatcaaaaaagaacatcattgtctaatgttgactacttaataattaaca 26261550  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 26261100 - 26261054
Alignment:
Q  369 aaaaataaatattaattgttcgatacttctccgatacgcgtatcggg 415  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||    
T  26261100 aaaaataaatattaattgcccgatacttctccgatatgcgtatcggg 26261054  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 26261323 - 26261273
Alignment:
Q  174 gtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaac 224  Q
    ||||||||||||||||||| |||||||||| |||  |||||||||||||||    
T  26261323 gtggtaatggttagaagagggaatagctatagctcggtggtgacgagaaac 26261273  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 54260093 - 54260056
Alignment:
Q  535 cgatacttcaccatttttggagtatcggggcttgagag 572  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  54260093 cgatacttcaccatttttggagtatcggggcttcagag 54260056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 26261424 - 26261383
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaa 165  Q
    ||||||||||||| |||||||||||||||||| |||| ||||    
T  26261424 cagaagaaacatagcattagagagaagagaaagagagcagaa 26261383  T

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Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 64 - 567
Target Start/End: Original strand, 46397774 - 46398266
Alignment:
Q  64 catctttgtctaatgttgactacttaacagttaacactaatttatatagaaaacaaacagcagaagaaacataacattagagagaagagaaacagagtag 163  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||  |||    
T  46397774 catctttgtctaatgttgattacttaatagttaacaataatttatatcgaaaacaaacaacagaagaaacataacattagagagaagagaaacag--tag 46397871  T
Q  164 aattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaaccctannnnnnnnaggttagaagagataatatgattttga 263  Q
    ||||||||| ||||||||| || |||||||||||| || ||| ||||||||||||||||||||||        ||||||||| |||   |||||||||||    
T  46397872 aattcaatcggtggtaatgattggaagagagaataactgttgatatgtggtgacgagaaaccctattttttt-aggttagaaaagac--tatgattttga 46397968  T
Q  264 tagcgctgcgagacttgataggtgtcggagtataagtaagctctgtcggagtacaagttagtcgtatccgacacggcgacacgtatcggtcannnnnnnc 363  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||        |||||||||            
T  46397969 tagcgctgtcagacttgataggtgtcggagtataagtaagctgtgtgggagtacaagttagtcgtatccgacacg--------tatcggtcatttttttt 46398060  T
Q  364 -cttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatccgacacgtatcggtcattgtttttcnnnnnnntaaatatt 462  Q
     |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  46398061 tcttcaaaaaataaatattaattgtccgatacttctccgatacgtgtatcgggacgtatccgacacgtatcggtcattgtttttcaaaaaaataaatatt 46398160  T
Q  463 aattgcccgatac-tttccgatacctgtatcgggacgcatcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcg 561  Q
    |||||||||| || |||| |||||| ||||||| ||| ||||  ||||||||||||| |||||||||  ||| ||||||| |||||||||||||||||||    
T  46398161 aattgcccgacacttttctgatacccgtatcggaacgtatcggagcgtatcggtatcagatacgtgttggatacgatactacaccatttttggagtatcg 46398260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 124 - 268
Target Start/End: Complemental strand, 33369114 - 33368975
Alignment:
Q  124 cagaagaaacataacattagagagaagagaaacagagtagaattcaatcagtggtaatggttagaagagagaatagctattgctatgtggtgacgagaaa 223  Q
    ||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  33369114 cagaagaaacatagcattagagaga---gaaacagagtagaattcaatcagtggtaatggttagaagagggaatagctatcgctatgtggtgacgagaaa 33369018  T
Q  224 ccctannnnnnnnaggttagaagagataatatgattttgatagcg 268  Q
    ||| |         ||||||||||||||||||| |||||||||||    
T  33369017 cccaattttttg--ggttagaagagataatatgtttttgatagcg 33368975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 364 - 422
Target Start/End: Original strand, 23206306 - 23206363
Alignment:
Q  364 cttcaaaaaataaatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||    
T  23206306 cttcaaaaaataaatattaattgtt-gatacttctccaatacgtgtatcgggacatatc 23206363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 33369199 - 33369145
Alignment:
Q  62 aacatctttgtctaatgttgactacttaacagttaacactaatttatatagaaaa 116  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||| || |||||    
T  33369199 aacacctttgtctaatgttgactacttaatagttaacactattttagattgaaaa 33369145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 29096232 - 29096172
Alignment:
Q  507 cgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 567  Q
    |||||| ||||||||||||||| |||  |||| ||||| |||||||| |||||||||||||    
T  29096232 cgtatcagtatcggatacgtgttagacacgattcttcatcatttttgaagtatcggggctt 29096172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 33368823 - 33368779
Alignment:
Q  368 aaaaaataaatattaattgttcgatacttctccgatacgcgtatc 412  Q
    |||||||||||||||||||   |||||||||||||||||||||||    
T  33368823 aaaaaataaatattaattgcctgatacttctccgatacgcgtatc 33368779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 29096273 - 29096227
Alignment:
Q  376 aatattaattgttcgatacttctccgatacgcgtatcgggacgtatc 422  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||    
T  29096273 aatattaattggccgatacttctccgatacgcatatcggaacgtatc 29096227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 567
Target Start/End: Original strand, 14430 - 14497
Alignment:
Q  500 atcgaggcgtatcggtatcggatacgtgtcagattcgatacttcaccatttttggagtatcggggctt 567  Q
    |||| ||||||||||||| ||||||| |||||   |||| |||||||||||||||||||  |||||||    
T  14430 atcggggcgtatcggtattggatacgcgtcaggcacgattcttcaccatttttggagtagtggggctt 14497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 14409 - 14442
Alignment:
Q  389 cgatacttctccgatacgcgtatcgggacgtatc 422  Q
    ||||||||||||||||||||||||||| ||||||    
T  14409 cgatacttctccgatacgcgtatcggggcgtatc 14442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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