View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_high_9 (Length: 377)
Name: NF5738_high_9
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 40751406 - 40751045
Alignment:
| Q |
16 |
attacacagttcttgcatatacttgcctttctatcagctctagcatatccaaagtacggaatcacagcagtgatatttttggctgatgctctccgacaag |
115 |
Q |
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| T |
40751406 |
attacacagttcttgcatatacttgcctttctatcagctctagcatatccaaagtacggaatcacagcagtgatatttttggccgatgctctccgacaag |
40751307 |
T |
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| Q |
116 |
catcaatcattacttgaagctccatgagattctcattagcaggaggacaagttggctgtataagatacacattgcaacctctaacactctcttgtaactg |
215 |
Q |
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| T |
40751306 |
catcaatcattacttgaagctccatgagattctcattagcaggaggacaagttggctgtataagatacacattgcaacctctaacactctcttgtaactg |
40751207 |
T |
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| Q |
216 |
gacatagatttcaccatcagcaaatcgctttgtggttatttttccaagttccagtcccatgtaccgagcaatttcctagttgaagcaacacaaggttcta |
315 |
Q |
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| T |
40751206 |
gacatagatttcaccatcagcaaatcgctttgtggttatttttccaagttccagtcccatgtaccgagcaatttcctagttgaagcaacacaaagttata |
40751107 |
T |
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| Q |
316 |
aaagagcaaagatatatcatatggaacctgcccaataacaagatgggtcatgcacatcatgt |
377 |
Q |
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| T |
40751106 |
aaagaacaaagatttctcatctgaaacctgcccaataaaaagatgggtcatgcaaatcatgt |
40751045 |
T |
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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 2341870 - 2342068
Alignment:
| Q |
41 |
cctttctatcagctctagcatatccaaagtacggaatcacagcagtgatatttttggctgatgctctccgacaagcatcaatcattacttgaagctccat |
140 |
Q |
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| T |
2341870 |
cctttctatcagctctagcatatccaaaatagggaatgactgcagtaatatttttggcagaagctctcctgcaggcatcaatcattacaagaagctccat |
2341969 |
T |
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| Q |
141 |
gagattctcattagcaggaggacaagttggctgtataagatacacattgcaacctctaacactctcttgtaactggacatagatttcaccatcagcaaa |
239 |
Q |
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| T |
2341970 |
aagattctcattcgcgggaggacatgtaggctgcacaagaaacacatcacaccccctgacactctcttgcagttggacatatatctccccatcggcaaa |
2342068 |
T |
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