View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_10 (Length: 377)
Name: NF5738_low_10
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 360
Target Start/End: Original strand, 55010171 - 55010509
Alignment:
| Q |
29 |
atcatggtggaatttcgacgatacaattgcttaccaataaactacttgtactgtattattttattattgtaccagtgggtgaaacactttctgact--aa |
126 |
Q |
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| T |
55010171 |
atcatggtggaatttcgacgatacaattgcttaccaataaactacttgtactgtattattttgttattgtaccagtgggtgaaacactttctgactctaa |
55010270 |
T |
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| Q |
127 |
ataaatgaaagattaaaagaaagcaggctagagtatttggatgttcttgtattcaagaatattgattcaaaacaaccgatagttttaatttattatactt |
226 |
Q |
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| T |
55010271 |
ataaatgaaagatgaaaagaaagcaggctagagtatttggacgttcttgtattcaagaatattgattcaaaacaaccgatagttttaatttattatactt |
55010370 |
T |
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| Q |
227 |
gttatgtttccacatggtttggagttgaatttgtctaagaaagtaagtttcaggaaagccactataagtgaccactctttggagaactctcaaccacgtg |
326 |
Q |
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| T |
55010371 |
gttatgtttccacatggtttggagttgaatttgtctaagaaagtaagtttcaggaaagccactataagtgaccactctttggagaactctcaaccacgtg |
55010470 |
T |
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| Q |
327 |
ggg-----atattacgcatgaagtatcttagattgtcat |
360 |
Q |
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| T |
55010471 |
gggatattatattacgcatgaagtatcttggattgtcat |
55010509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 51233112 - 51232870
Alignment:
| Q |
22 |
cagagagatcatggtggaatttcgacgatacaattgcttaccaataaactacttgtactgtattattttattattgtaccagtgggtgaaacactttctg |
121 |
Q |
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| T |
51233112 |
cagagagatgatggtggaatttcgacaatacaattgcttaccaataaactaat---attgtattgttttattattgtaccagtg----aaacactttcta |
51233020 |
T |
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| Q |
122 |
acta-aataaatgaaagatta-aaagaaagcaggctagagtatttggatgttcttgtattcaagaatattgattcaaaacaaccgatagttttaatttat |
219 |
Q |
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||| |||||||||||||| | |||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
51233019 |
actctaataaatgaaagatgataaagaaggcagggtagagtatttcgacgttcttgtattcaagaatattgattcaaaacaaccgttagtatttctttaa |
51232920 |
T |
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| Q |
220 |
tatacttgttatgtttccacatggtttggagttg-aatttgtctaagaaa |
268 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||| |||| |
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| T |
51232919 |
tatacttgtcatgtttccacatggtttggagttgaaatttgtctaggaaa |
51232870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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