View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_12 (Length: 333)
Name: NF5738_low_12
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 15926577 - 15926403
Alignment:
| Q |
8 |
cgaagaatataggtcaattttctatgtattttaaatttaggaaagatcataactttaaactaaaaggtggtaaacttgagtgaggttgcataactccaaa |
107 |
Q |
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| T |
15926577 |
cgaagaaaataggtcaattttctatgtattttaaatttaggaaagatcataactttaaactaaaaggtggtaaacttgagtgaggttgcataactccaaa |
15926478 |
T |
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| Q |
108 |
aagcgtagttgaaaagttaatgtaccctgactgaatttttaaccacacattgactttcaaactaccacttttgtc |
182 |
Q |
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| T |
15926477 |
aagcgtagttgaaaagttgatgtaccctgactgaatttttaaccacacgttgacttttaaactaccacttttgtc |
15926403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 8266365 - 8266539
Alignment:
| Q |
8 |
cgaagaatataggtcaattttctatgtattttaaatttaggaaagatcataactttaaactaaaaggtggtaaacttgagtgaggttgcataactccaaa |
107 |
Q |
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| T |
8266365 |
cgaagaaaataggtcaattttctatgaattataaatctaggaaagatcataaatttaaactgaatggtggtaaacttgaatgtggttgcgtccctccaaa |
8266464 |
T |
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| Q |
108 |
aagcgtagttgaaaagttaatgtaccctgactgaatttttaaccacacattgactttcaaactaccacttttgtc |
182 |
Q |
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| T |
8266465 |
aagtgtatttgaaaagttgatgtacattgactaaatttttgacaacacattgacttttgaactaccacttttgtc |
8266539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 315
Target Start/End: Complemental strand, 15926344 - 15926270
Alignment:
| Q |
241 |
gggttataagaaattttgtgatacttttacataattttataaaaataaataaccatgagttcagctgtttagcct |
315 |
Q |
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| T |
15926344 |
gggttataagaaattttgtgatacttttatataattttataaaaataaataaccatgtgttcagctgtttagcct |
15926270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 8266589 - 8266663
Alignment:
| Q |
242 |
ggttataagaaattttgtgatacttttacataattttataaaaataaataaccatgagttcagctgtttagcctg |
316 |
Q |
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| T |
8266589 |
ggttataagaaattttgtggaacttttatataaatttataaaaataaataactacgagtccagttgtttagcctg |
8266663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 12066857 - 12066759
Alignment:
| Q |
10 |
aagaatataggtcaattttctatgtattttaaatttaggaaagatcataactttaaactaaaaggtggtaaacttgagtgaggttgcataactccaaaa |
108 |
Q |
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| T |
12066857 |
aagaaaataggtcaattttagatgaattgtaaatctaggaaagatcatagctttaaaacggaaggtgataaacttgaatgaggttgtttcactccaaaa |
12066759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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