View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5738_low_13 (Length: 317)

Name: NF5738_low_13
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5738_low_13
NF5738_low_13
[»] chr1 (11 HSPs)
chr1 (51-307)||(35943088-35943344)
chr1 (60-153)||(51445817-51445910)
chr1 (55-189)||(48527756-48527890)
chr1 (76-189)||(27556512-27556625)
chr1 (50-153)||(14478484-14478587)
chr1 (71-141)||(9226022-9226092)
chr1 (103-165)||(3616675-3616737)
chr1 (109-177)||(13147201-13147269)
chr1 (61-149)||(48096833-48096921)
chr1 (195-248)||(52077856-52077909)
chr1 (103-147)||(34350399-34350443)
[»] chr2 (5 HSPs)
chr2 (50-153)||(4920855-4920958)
chr2 (76-181)||(16290560-16290666)
chr2 (60-139)||(13030196-13030275)
chr2 (50-153)||(28611049-28611152)
chr2 (51-201)||(13029498-13029648)
[»] chr8 (6 HSPs)
chr8 (103-189)||(43202367-43202453)
chr8 (61-134)||(28420061-28420134)
chr8 (61-137)||(28418962-28419038)
chr8 (50-152)||(42871033-42871135)
chr8 (60-153)||(9854674-9854767)
chr8 (122-186)||(42878674-42878738)
[»] chr5 (7 HSPs)
chr5 (79-189)||(1102864-1102974)
chr5 (59-189)||(22048894-22049024)
chr5 (63-153)||(223455-223545)
chr5 (144-186)||(1103803-1103845)
chr5 (51-153)||(5976875-5976977)
chr5 (122-186)||(1009393-1009457)
chr5 (55-135)||(36898791-36898871)
[»] chr6 (7 HSPs)
chr6 (61-153)||(17837845-17837937)
chr6 (61-153)||(29381525-29381617)
chr6 (61-137)||(232330-232406)
chr6 (61-137)||(233453-233529)
chr6 (50-153)||(11723004-11723107)
chr6 (250-294)||(29381377-29381421)
chr6 (250-294)||(17838032-17838076)
[»] chr3 (9 HSPs)
chr3 (51-137)||(50810718-50810804)
chr3 (51-137)||(50865060-50865146)
chr3 (61-137)||(50809577-50809653)
chr3 (61-137)||(50866209-50866285)
chr3 (62-165)||(53622881-53622984)
chr3 (50-153)||(13621137-13621240)
chr3 (50-153)||(49379919-49380022)
chr3 (50-153)||(54110080-54110183)
chr3 (62-153)||(44602839-44602930)
[»] chr7 (6 HSPs)
chr7 (60-153)||(39981543-39981636)
chr7 (50-147)||(47059330-47059427)
chr7 (50-95)||(48312258-48312303)
chr7 (61-142)||(24282782-24282863)
chr7 (51-91)||(28325289-28325329)
chr7 (51-189)||(43441564-43441702)
[»] chr4 (16 HSPs)
chr4 (58-189)||(6349310-6349439)
chr4 (62-189)||(45535274-45535401)
chr4 (62-153)||(52138587-52138678)
chr4 (55-189)||(36845632-36845766)
chr4 (61-149)||(40723453-40723541)
chr4 (62-189)||(23103768-23103895)
chr4 (51-153)||(27850732-27850833)
chr4 (60-153)||(26496105-26496198)
chr4 (50-138)||(1520028-1520116)
chr4 (61-153)||(38555073-38555165)
chr4 (51-137)||(1829968-1830054)
chr4 (61-151)||(53205282-53205371)
chr4 (116-153)||(4714380-4714417)
chr4 (50-139)||(56085564-56085653)
chr4 (74-138)||(668627-668691)
chr4 (73-137)||(42810014-42810078)
[»] scaffold0011 (1 HSPs)
scaffold0011 (73-139)||(127673-127739)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 307
Target Start/End: Complemental strand, 35943344 - 35943088
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttatt 150  Q
    ||||||||| ||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  35943344 aaaggatgaccattgaattacgcaggtctattttatcttacgatgaaccattaacatctaattaattatctctttcttcgtcttcttcctcactcttatt 35943245  T
Q  151 cattgtcttcaacataatcttcatcaacaccgtcatcatttgcccaaaaacatcaaccactatcaacatcaacaccatcatccccgttgatttctattga 250  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||  || | ||| ||||||||    
T  35943244 cattgtcttcaacataattttcatcaacaccatcatcatttgcccaaaaacatcaaccactatcaacagcaacaacattattgccatcgatctctattga 35943145  T
Q  251 ttcctcacatcactaccataaattattttcaaaccttaattttttccagcagcatat 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35943144 ttcctcacatcactatcataaattattttcaaaccttaattttttccagcagcatat 35943088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 51445817 - 51445910
Alignment:
Q  60 tcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||| ||||||| |||||||||||||||||   ||  |||| |||||||||| ||||||||||||||||||||||||| ||| |||||    
T  51445817 tcattggattacgcaggtgtattttatcttacggtgagtcaacaacaactaattaattctccctttcttcatcttcttcctcacccttcttcat 51445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 48527756 - 48527890
Alignment:
Q  55 gatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcatt 154  Q
    ||||| |||||||||  ||| || ||||||||||| |||||   || ||||| |||||||||| | | ||||||||||||||||||||||||| |||||     
T  48527756 gatgaccattggattatgcaagtgtattttatcttccggtgagtcaataacaactaattaatttttcttttcttcatcttcttcctcactcttgttcatc 48527855  T
Q  155 gtcttcaacataatcttcatcaacaccgtcatcat 189  Q
     |||||||||| |  || ||||||||| |||||||    
T  48527856 atcttcaacatcacatttatcaacaccatcatcat 48527890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 27556512 - 27556625
Alignment:
Q  76 gtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttcaacataatcttcatc 175  Q
    |||||||||||||||| |||   ||  |||| ||||||||||||| | || ||||||||| ||||||||||| |||||  |||||||||| |  ||||||    
T  27556512 gtctattttatcttacagtgagtcaacaacaactaattaattatctcattattcatcttcatcctcactcttcttcatcatcttcaacatcacattcatc 27556611  T
Q  176 aacaccgtcatcat 189  Q
    |||||| |||||||    
T  27556612 aacaccatcatcat 27556625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 14478484 - 14478587
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||| | |||||| ||| ||||||| |||||||||||||||||   ||  ||||  |||||| || |||||||||||||||||||||||||| || |    
T  14478484 aaaaggagggtcattgaattacgcaggtgtattttatcttacggtgagtcaacaacacttaattatttctccctttcttcatcttcttcctcacttttct 14478583  T
Q  150 tcat 153  Q
    ||||    
T  14478584 tcat 14478587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 9226092 - 9226022
Alignment:
Q  71 cgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctc 141  Q
    |||| ||||||||||||||||||||   ||||||||||||||||||| || |||||||||| |||| ||||    
T  9226092 cgcatgtctattttatcttacggtgagtcattaacatctaattaattttctctttcttcattttctacctc 9226022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 3616737 - 3616675
Alignment:
Q  103 aacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttcaacat 165  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||| |||||  ||||||||||    
T  3616737 aacaactaattaattcccccttccttcatcttcttcctcactctttttcatcatcttcaacat 3616675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 13147269 - 13147201
Alignment:
Q  109 taattaattatccctttcttcatcttcttcctcactcttattcattgtcttcaacataatcttcatcaa 177  Q
    ||||||||| ||| |||||||||||| || ||||||||| |||||  |||||||||| || ||||||||    
T  13147269 taattaattctccttttcttcatcttttttctcactcttcttcatcatcttcaacatcatattcatcaa 13147201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 48096921 - 48096833
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||||| |  |||| |||||||||||||||||   |  ||||| |||||||||| ||  |||||||||||||||||| ||||||||    
T  48096921 cattggattacataggtgtattttatcttacggtgagtcgataacaactaattaattttctttttcttcatcttcttccttactcttat 48096833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 52077909 - 52077856
Alignment:
Q  195 caaaaacatcaaccactatcaacatcaacaccatcatccccgttgatttctatt 248  Q
    |||||||||||||||  ||||||| ||||| ||||||| || ||||||||||||    
T  52077909 caaaaacatcaaccatcatcaacaacaacatcatcatcaccattgatttctatt 52077856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 34350399 - 34350443
Alignment:
Q  103 aacatctaattaattatccctttcttcatcttcttcctcactctt 147  Q
    |||| |||||||||| || |||||||| |||||||||||||||||    
T  34350399 aacaactaattaattttcactttcttcttcttcttcctcactctt 34350443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 4920958 - 4920855
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||||   ||  |||| |||||||||| ||||||| ||||||||||||||||||||| |    
T  4920958 aaaaggaggatcattggattacgcaggtgtattttatcttacggtgagtcaacaacaactaattaattctcccttttttcatcttcttcctcactcttct 4920859  T
Q  150 tcat 153  Q
    ||||    
T  4920858 tcat 4920855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 16290666 - 16290560
Alignment:
Q  76 gtctattttatcttacggtggaccattaacatctaattaattatcccttt-cttcatcttcttcctcactcttattcattgtcttcaacataatcttcat 174  Q
    ||||||||||||||| ||||   ||||||||||||||| ||| | | ||| ||||||||||| | |||||||| |||||  |||||||||||||||||||    
T  16290666 gtctattttatcttatggtgagtcattaacatctaatttatttttctttttcttcatcttctacatcactcttgttcatcatcttcaacataatcttcat 16290567  T
Q  175 caacacc 181  Q
    || ||||    
T  16290566 cagcacc 16290560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 13030275 - 13030196
Alignment:
Q  60 tcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcc 139  Q
    |||| |||||||||||||||||||||||||||  ||   |   |||| |||||||||| |||||||||||||||||||||    
T  13030275 tcatcggattgcgcaggtctattttatcttacattgagtctacaacaactaattaattttccctttcttcatcttcttcc 13030196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 28611152 - 28611049
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||| | |||||| ||| ||||||| |||||||||||| ||||   ||  ||||  |||||| || |||||||||||||||||||||||||| || |    
T  28611152 aaaaggagggtcattgaattacgcaggtgtattttatcttatggtgagtcaacaacacttaattatttctccctttcttcatcttcttcctcacttttct 28611053  T
Q  150 tcat 153  Q
    ||||    
T  28611052 tcat 28611049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 13029498 - 13029648
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttatt 150  Q
    |||||| | |||||||||| || | ||||||||| ||||||||||   ||  || |  ||||||||| |  |||||||| |||||||||||| |||| ||    
T  13029498 aaaggagggtcattggattacgaatgtctattttctcttacggtgagtcaacaaaagttaattaattttttctttcttcgtcttcttcctcattcttgtt 13029597  T
Q  151 cattgtcttcaacataatcttcatcaacaccgtcatcatttgcccaaaaac 201  Q
    | |  |||||||| | |  |||||||||||| ||||||| | |||||||||    
T  13029598 cgtcatcttcaacgtcacattcatcaacaccatcatcatctacccaaaaac 13029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 43202367 - 43202453
Alignment:
Q  103 aacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttcaacataatcttcatcaacaccgtcatcat 189  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |  |||||||||| || |||||||||||| |||||||    
T  43202367 aacaactaattaattttccctttcttcatcttcttcctcactcttgttcttcatcttcaacatcatattcatcaacaccatcatcat 43202453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 28420134 - 28420061
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatctt 134  Q
    ||||||||| |||| |||||||||||||||||||| | ||  ||||||||||||||| || |||||||||||||    
T  28420134 cattggattacgcatgtctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatctt 28420061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 28418962 - 28419038
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    ||||||||| |||| | |||||||||||||||||| | ||  ||||||||||||||| || ||||||||||||||||    
T  28418962 cattggattacgcatgcctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatcttctt 28419038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 42871033 - 42871135
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    |||||||||| ||||| ||| |||| || ||||||||||||| | |   ||  |||| ||||||| || ||||||||||||||||||||||| ||||| |    
T  42871033 aaaaggatgaccattgaattacgcatgtgtattttatcttaccgcgagtcaacaacacctaattatttctccctttcttcatcttcttcctccctcttct 42871132  T
Q  150 tca 152  Q
    |||    
T  42871133 tca 42871135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 9854767 - 9854674
Alignment:
Q  60 tcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||| |||| || | |||||||||||||||   ||  |||| |||||||||  ||| |||||| ||||||||| |||||||| |||||    
T  9854767 tcattggattacgcatgtgtgttttatcttacggtgagtcaacaacaactaattaatcctccttttctttatcttcttcttcactcttcttcat 9854674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 42878738 - 42878674
Alignment:
Q  122 ctttcttcatcttcttcctcactcttattcattgtcttcaacataatcttcatcaacaccgtcat 186  Q
    ||||||||||||||||||||| |||| |||||  || ||||||| |  |||||||||||| ||||    
T  42878738 ctttcttcatcttcttcctcaatcttgttcatcatcctcaacatcacattcatcaacaccatcat 42878674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 1102864 - 1102974
Alignment:
Q  79 tattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttcaacataatcttcatcaac 178  Q
    |||||||||||||||||   || ||||| |||||||||| | ||||||||||||||||||||||||||| |||||  |||||||||| |  |||||||||    
T  1102864 tattttatcttacggtgagtcaataacagctaattaatttttcctttcttcatcttcttcctcactcttgttcatcatcttcaacatcacattcatcaac 1102963  T
Q  179 accgtcatcat 189  Q
    | | |||||||    
T  1102964 atcatcatcat 1102974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 22049024 - 22048894
Alignment:
Q  59 atcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtct 158  Q
    ||||||||||| |||| |||||||||||||||| ||| ||||  | || |||||| ||| ||||| ||||||||||||||||  ||||| |||||  |||    
T  22049024 atcattggattacgcatgtctattttatcttacagtgaaccaacatcagctaatttattttccctctcttcatcttcttccttgctcttgttcatcatct 22048925  T
Q  159 tcaacataatcttcatcaacaccgtcatcat 189  Q
    |||| || |  ||||| |||||| |||||||    
T  22048924 tcaatatcacattcatgaacaccatcatcat 22048894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 223455 - 223545
Alignment:
Q  63 ttggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    ||||||| | || ||||||||||||||||||||   ||  ||||||||| |   |||||| |||||||||||||||||  |||||||||||    
T  223455 ttggattactcatgtctattttatcttacggtgagtcaacaacatctaactttatatcccattcttcatcttcttccttcctcttattcat 223545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 1103845 - 1103803
Alignment:
Q  144 tcttattcattgtcttcaacataatcttcatcaacaccgtcat 186  Q
    ||||||||||  |||||||||||||||||||||||||| ||||    
T  1103845 tcttattcatcatcttcaacataatcttcatcaacaccatcat 1103803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 5976977 - 5976875
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttatt 150  Q
    |||||| |||||||||||| |||| |||||||||||||||| |||   ||  |||  |||| |   |||||| |||||||||||||||||  ||||||||    
T  5976977 aaaggaggatcattggattacgcaagtctattttatcttactgtgagtcaacaacggctaactttatatcccattcttcatcttcttccttcctcttatt 5976878  T
Q  151 cat 153  Q
    |||    
T  5976877 cat 5976875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 1009393 - 1009457
Alignment:
Q  122 ctttcttcatcttcttcctcactcttattcattgtcttcaacataatcttcatcaacaccgtcat 186  Q
    ||||||||||||||||||||| |||| |||||  | |||||||| |  |||||||||||| ||||    
T  1009393 ctttcttcatcttcttcctcaatcttgttcatcattttcaacatcacattcatcaacaccatcat 1009457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 36898871 - 36898791
Alignment:
Q  55 gatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttc 135  Q
    ||||| ||||||||| |||| ||||||||||||||||| || ||||  |||| ||||||  || | | |||||||||||||    
T  36898871 gatgaccattggattacgcatgtctattttatcttacgatgtaccaccaacacctaatttttttttcttttcttcatcttc 36898791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 17837845 - 17837937
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||  ||||||||||||||||||||| || ||||  |||||||||||  || ||| ||||||||||||||||||||||||| |||||    
T  17837845 cattggattaggcaggtctattttatcttacgatgtaccaccaacatctaattttttgtccttttcttcatcttcttcctcactcttgttcat 17837937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 29381617 - 29381525
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||  ||||||||||||||||||||| || ||||  |||||||||||  || ||| ||||||||||||||||||||||||| |||||    
T  29381617 cattggattaggcaggtctattttatcttacgatgtaccaccaacatctaattttttgtccttttcttcatcttcttcctcactcttgttcat 29381525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 232330 - 232406
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    ||||||||| |||| |||||||||||||||||||| | ||  ||||||||||||||| || ||||||||||||||||    
T  232330 cattggattacgcatgtctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatcttctt 232406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 233529 - 233453
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    ||||||||| | || |||||||||||||||| ||| | ||  ||||||||||||||| || ||||||||||||||||    
T  233529 cattggattacacatgtctattttatcttacagtgaatcaacaacatctaattaattttctctttcttcatcttctt 233453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 11723004 - 11723107
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||| | |||||||||| | ||||| |||||| ||||||||||   ||  ||||  |||||| || |||||||||||||||||||||||||| || |    
T  11723004 aaaaggagggtcattggattacacaggtgtattttctcttacggtgagtcaacaacacttaattatttctccctttcttcatcttcttcctcacttttct 11723103  T
Q  150 tcat 153  Q
    ||||    
T  11723104 tcat 11723107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 29381421 - 29381377
Alignment:
Q  250 attcctcacatcactaccataaattattttcaaaccttaattttt 294  Q
    |||||||||||||||||||||||||||||||| | || |||||||    
T  29381421 attcctcacatcactaccataaattattttcagatctgaattttt 29381377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 17838032 - 17838076
Alignment:
Q  250 attcctcacatcactaccataaattattttcaaaccttaattttt 294  Q
    |||| ||||||||||||||||||||||||||| | || |||||||    
T  17838032 attcttcacatcactaccataaattattttcatatctgaattttt 17838076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 50810804 - 50810718
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    |||||| || ||||||||| |||| |||||||||||||||||||| | ||  ||||||||||||||| || ||||||||||||||||    
T  50810804 aaaggaggaccattggattacgcatgtctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatcttctt 50810718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 50865060 - 50865146
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    |||||| || ||||||||| |||| |||||||||||||||||||| | ||  ||||||||||||||| || ||||||||||||||||    
T  50865060 aaaggaggaccattggattacgcatgtctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatcttctt 50865146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 50809577 - 50809653
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    ||||||||| |||| |||||||||||||||||||| | ||  ||||||||||||||| || ||||||||||||||||    
T  50809577 cattggattacgcatgtctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatcttctt 50809653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 50866285 - 50866209
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    ||||||||| |||| |||||||||||||||||||| | ||  ||||||||||||||| || ||||||||||||||||    
T  50866285 cattggattacgcatgtctattttatcttacggtgaatcaacaacatctaattaattttctctttcttcatcttctt 50866209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 53622881 - 53622984
Alignment:
Q  62 attggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttca 161  Q
    |||||||| |||| ||||||||||||||||  ||   ||  |||| | |||||||| || ||||||||||||||||||||||||||||| ||| ||||||    
T  53622881 attggattacgcatgtctattttatcttacattgagtcaacaacaaccaattaattttcactttcttcatcttcttcctcactcttatttattatcttca 53622980  T
Q  162 acat 165  Q
    ||||    
T  53622981 acat 53622984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 13621137 - 13621240
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||| | |||||||||| ||||| | |||||||||||||||||   ||  ||||  |||||| || |||||||||||||||||||||||||| || |    
T  13621137 aaaaggagggtcattggattacgcagatgtattttatcttacggtgagtcaacaacacttaattatttctccctttcttcatcttcttcctcacttttct 13621236  T
Q  150 tcat 153  Q
    ||||    
T  13621237 tcat 13621240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 49379919 - 49380022
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||| | |||||||||| ||||| | |||||||||||||||||   ||  ||||  |||||| || |||||||||||||||||||||||||| || |    
T  49379919 aaaaggagggtcattggattacgcagatgtattttatcttacggtgagtcaacaacacttaattatttctccctttcttcatcttcttcctcacttttct 49380018  T
Q  150 tcat 153  Q
    ||||    
T  49380019 tcat 49380022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 54110183 - 54110080
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    |||| ||||| |||||||||  | ||||||||||||||||| ||||   ||  |||| |||||||||| || |||||||||||||| ||||||||||| |    
T  54110183 aaaacgatgaccattggattttgtaggtctattttatcttatggtgagtcaacaacaactaattaattctctctttcttcatcttcatcctcactcttct 54110084  T
Q  150 tcat 153  Q
    ||||    
T  54110083 tcat 54110080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 44602930 - 44602839
Alignment:
Q  62 attggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||| |||  |||||||||||||||| |||   ||  |||| |||||||||| || | |||||||||||| ||||||||||| |||||    
T  44602930 attggattacgcgtgtctattttatcttacagtgagtcaacaacaactaattaattctctccttcttcatcttcatcctcactcttcttcat 44602839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 39981543 - 39981636
Alignment:
Q  60 tcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||| |||| || |||||||||||||||||   ||  |||| |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  39981543 tcattggattacgcatgtgtattttatcttacggtgagtcaacaacaactaactaattctccctttcttcatcttcttcctcactcttcttcat 39981636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 47059330 - 47059427
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactctt 147  Q
    |||||||||| ||||||||| |||| || ||||||||||||| |||   || ||||| || |||| || || ||||||||||||||||||||||||||    
T  47059330 aaaaggatgaccattggattacgcatgtgtattttatcttacagtgagtcaataacacctgattatttctctctttcttcatcttcttcctcactctt 47059427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 48312258 - 48312303
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtg 95  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||    
T  48312258 aaaaggatgaccattggattacgcaggtctattttatcttacggtg 48312303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 24282863 - 24282782
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctca 142  Q
    |||||||| | |||||||||||||| ||||| ||||||||   ||| |||||| ||| |  |||||||||||||||||||||    
T  24282863 cattggatcgtgcaggtctattttaacttacagtggaccacctacaactaatttatttttgctttcttcatcttcttcctca 24282782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 28325289 - 28325329
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttac 91  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  28325289 aaaggaggatcattggattgcgcaagtctattttatcttac 28325329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 43441564 - 43441702
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttatt 150  Q
    |||||||||  |||||||| |||| || ||||||||||||||||    ||  || |  |||||| || || |||||||||||  ||||||||||||| ||    
T  43441564 aaaggatgactattggattacgcaagtgtattttatcttacggtaagtcaacaataggtaattatttttctctttcttcatccccttcctcactcttgtt 43441663  T
Q  151 cattgtcttcaacataatcttcatcaacaccgtcatcat 189  Q
    |||  |||||||||| |  |||| ||||||| |||||||    
T  43441664 catcatcttcaacatcacattcaacaacaccatcatcat 43441702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 6349439 - 6349310
Alignment:
Q  58 gatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtc 157  Q
    |||| ||||||| |||| || |||||||||||| ||||   ||  |||| |||||||||| ||  ||||||| ||||||||||||||||| |||||  ||    
T  6349439 gatcgttggattacgcaagtgtattttatcttatggtgagtcaacaacaactaattaattttc--tttcttcttcttcttcctcactcttgttcatcatc 6349342  T
Q  158 ttcaacataatcttcatcaacaccgtcatcat 189  Q
    |||| ||| || |||||||||||| |||||||    
T  6349341 ttcaccatcatattcatcaacaccatcatcat 6349310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 45535274 - 45535401
Alignment:
Q  62 attggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttca 161  Q
    |||||||| |||  |||||||||||||||| |||   ||  |||| |||||||||| || | || ||||||||| ||||||||||| |||||  ||||||    
T  45535274 attggattacgcgtgtctattttatcttacagtgagtcaacaacaactaattaattctctcctttttcatcttcatcctcactcttcttcatcatcttca 45535373  T
Q  162 acataatcttcatcaacaccgtcatcat 189  Q
    |||| |  |||||||||||| |||||||    
T  45535374 acatcacattcatcaacaccatcatcat 45535401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 52138678 - 52138587
Alignment:
Q  62 attggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||| |||| || |||||||||||||||||   || ||||| |||||||||| | | |||||||||||||||| |||||||| |||||    
T  52138678 attggattacgcatgtgtattttatcttacggtgagtcaataacaactaattaattcttcttttcttcatcttcttcttcactcttcttcat 52138587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 36845632 - 36845766
Alignment:
Q  55 gatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcatt 154  Q
    ||||| ||||||||| ||||||| ||||||||||||||||    ||  ||||  |||||| || || |||||||||||| ||||||||||||| |||||     
T  36845632 gatgaccattggattacgcaggtgtattttatcttacggtaagtcaacaacaggtaattatttttctctttcttcatctccttcctcactcttgttcatc 36845731  T
Q  155 gtcttcaacataatcttcatcaacaccgtcatcat 189  Q
     ||||||| || |  |||| ||||||| |||||||    
T  36845732 atcttcaagatcacattcaacaacaccatcatcat 36845766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 40723453 - 40723541
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttat 149  Q
    ||||||||| ||| ||| |||||||||||||||||   |  ||||| |||||||||| ||  |||||||||||||||||| ||||||||    
T  40723453 cattggattacgctggtgtattttatcttacggtgagtcgataacaactaattaattttctttttcttcatcttcttccttactcttat 40723541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 23103895 - 23103768
Alignment:
Q  62 attggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcattgtcttca 161  Q
    |||||||| |||  |||||||||||||||| |||   ||  |||| || ||||||| || | || ||||||||| ||||||||||| |||||  ||||||    
T  23103895 attggattacgcgtgtctattttatcttacagtgagtcaacaacaactcattaattctctcctttttcatcttcatcctcactcttcttcatcatcttca 23103796  T
Q  162 acataatcttcatcaacaccgtcatcat 189  Q
    |||| |  |||||||||||| |||||||    
T  23103795 acatcacattcatcaacaccatcatcat 23103768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 27850833 - 27850732
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttatt 150  Q
    |||||| ||||||||||| |||||  |||||||||||||||||||   ||  |||| | |||||| | || ||||||||||||||||||| |||||| ||    
T  27850833 aaaggaggatcattggat-gcgcatatctattttatcttacggtgtgtcaacaacaaccaattaactttcactttcttcatcttcttccttactcttgtt 27850735  T
Q  151 cat 153  Q
    |||    
T  27850734 cat 27850732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 26496198 - 26496105
Alignment:
Q  60 tcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||| | ||| | |||||||||||||||||   ||  ||||  |||||| || |||||||||||||||||||||||||| || |||||    
T  26496198 tcattggattacacagatgtattttatcttacggtgagtcaacaacacttaattatttctccctttcttcatcttcttcctcacttttcttcat 26496105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 1520028 - 1520116
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttc 138  Q
    |||||||||| |||| |||| || | || ||||||||||||||||| | ||  |||| |||||||  | ||||||||||||||||||||    
T  1520028 aaaaggatgaccattagattacgtaagtgtattttatcttacggtgaatcaacaacacctaattatgtctccctttcttcatcttcttc 1520116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 38555165 - 38555073
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattcat 153  Q
    ||||||||| | || ||||||||||||||||||||   ||  ||||||||| |   |||||| |||||||||||||||||  |||||||||||    
T  38555165 cattggattacacatgtctattttatcttacggtgagtcaacaacatctaactttatatcccattcttcatcttcttccttcctcttattcat 38555073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 137
Target Start/End: Original strand, 1829968 - 1830054
Alignment:
Q  51 aaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    |||||| || |||| |||| || ||||||||||||||||||| ||   ||  |||||| |||||||| |||||| ||||||||||||    
T  1829968 aaaggaggaccattagattacgtaggtctattttatcttacgttgagtcaacaacatccaattaattttcccttccttcatcttctt 1830054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 53205371 - 53205282
Alignment:
Q  61 cattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcctcactcttattc 151  Q
    |||||||||| |||||||||||||| ||||| ||||||||   ||| |||||| ||  |  ||||||||||| ||||||||| ||||||||    
T  53205371 cattggattgtgcaggtctattttaacttacagtggaccacctacaactaatttatctttgctttcttcatcctcttcctca-tcttattc 53205282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 4714380 - 4714417
Alignment:
Q  116 ttatccctttcttcatcttcttcctcactcttattcat 153  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  4714380 ttatccctttcttcatcttcttcctcacccttcttcat 4714417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 56085564 - 56085653
Alignment:
Q  50 aaaaggatgatcattggattgcgcaggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcc 139  Q
    |||||||||| | ||||||  | || || ||||||||||||| ||| ||||| ||||  |||||  |||| |||||||||||||||||||    
T  56085564 aaaaggatgaccgttggatcacacatgtgtattttatcttacagtgaaccatcaacacttaattctttattcctttcttcatcttcttcc 56085653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 668627 - 668691
Alignment:
Q  74 aggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttc 138  Q
    ||||||||| |||| |||  || ||||| |||| ||||||| || ||||||||||||||||||||    
T  668627 aggtctattgtatcatacaatgaaccatcaacaactaattatttttccctttcttcatcttcttc 668691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 42810078 - 42810014
Alignment:
Q  73 caggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttctt 137  Q
    ||||| |||||||||||||||||   ||  |||||||||||| || |||||||||||| ||||||    
T  42810078 caggtgtattttatcttacggtgagtcaacaacatctaattatttctccctttcttcaccttctt 42810014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 127673 - 127739
Alignment:
Q  73 caggtctattttatcttacggtggaccattaacatctaattaattatccctttcttcatcttcttcc 139  Q
    |||||||||||||||||||||||   ||  ||||||||||||| | |||||||||||||||||||||    
T  127673 caggtctattttatcttacggtgagtcaacaacatctaattaactttccctttcttcatcttcttcc 127739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University