View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5738_low_15 (Length: 314)

Name: NF5738_low_15
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5738_low_15
NF5738_low_15
[»] chr3 (1 HSPs)
chr3 (13-296)||(31105000-31105297)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 31105000 - 31105297
Alignment:
Q  13 aatattaagtgatgggggcaacaaatatatacatttgtagcatattgttgtttccaagaagaagaaaaaacactcctacgtttatttttgaagcgcttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31105000 aatattaagtgatgggggcaacaaatatatacatttgtagcatattgttgtttccaagaagaagaaaaaacactcctacatttatttttgaagcgcttct 31105099  T
Q  113 taacatgattcatatagaaaa--------------atgttaaaaacaaagtggggacacttgcagccacaatgattcacataagttcatcccttctaagg 198  Q
    || ||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31105100 tagcatgattcatatagaaaaatgttaaggaaaaaatgttaaaaacaaagtggggacacttgcagccacaatgattcacataagttcatcccttctaagg 31105199  T
Q  199 ttagcagtatcagctttactttgtgatttttgagtttgattctcaatttgtggtggatatagtcagatgatttggggccaatgattcctcggaatatg 296  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31105200 ttagcagtatcagctttactttgtggtttttgagtttgattctcaatttgtggtggatatagtcagatgatttggggccaatgattcctcggaatatg 31105297  T

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