View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5738_low_17 (Length: 274)

Name: NF5738_low_17
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5738_low_17
NF5738_low_17
[»] chr4 (3 HSPs)
chr4 (13-257)||(54396452-54396696)
chr4 (13-255)||(23596482-23596724)
chr4 (13-257)||(23587628-23587872)
[»] chr7 (8 HSPs)
chr7 (13-180)||(8017385-8017552)
chr7 (13-194)||(8102696-8102877)
chr7 (38-108)||(8581754-8581824)
chr7 (46-168)||(39985708-39985830)
chr7 (23-112)||(7877773-7877862)
chr7 (47-108)||(8570374-8570435)
chr7 (47-111)||(8609980-8610044)
chr7 (61-125)||(8628609-8628673)
[»] chr2 (4 HSPs)
chr2 (46-93)||(17648100-17648147)
chr2 (46-93)||(17666742-17666789)
chr2 (149-255)||(5445648-5445754)
chr2 (45-93)||(17705797-17705845)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 54396452 - 54396696
Alignment:
Q  13 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396452 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 54396551  T
Q  113 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396552 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 54396651  T
Q  213 ctttcttatccaaaccataagcaattgcagcagcagtaggctcat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  54396652 ctttcttatccaaaccataagcaattgcagcagcagtaggctcat 54396696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 23596724 - 23596482
Alignment:
Q  13 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    |||||| |||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||    
T  23596724 aatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct 23596625  T
Q  113 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 212  Q
    ||||| || ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | ||    
T  23596624 ttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgtag 23596525  T
Q  213 ctttcttatccaaaccataagcaattgcagcagcagtaggctc 255  Q
    |||||||||| | |||||||||||| || |||||||| |||||    
T  23596524 ctttcttatcaagaccataagcaatagcggcagcagtgggctc 23596482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 23587872 - 23587628
Alignment:
Q  13 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    ||||||||||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||    
T  23587872 aatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagct 23587773  T
Q  113 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaag 212  Q
    || || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | ||    
T  23587772 ttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgtag 23587673  T
Q  213 ctttcttatccaaaccataagcaattgcagcagcagtaggctcat 257  Q
    |||||||||| | |||||||||||| |||||||| ||||| ||||    
T  23587672 ctttcttatcaagaccataagcaatagcagcagcggtaggttcat 23587628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 8017552 - 8017385
Alignment:
Q  13 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    |||||||||||| || |||||| ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||     
T  8017552 aatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagcc 8017453  T
Q  113 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaa 180  Q
    || ||||| || || || |||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  8017452 ttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaa 8017385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 8102696 - 8102877
Alignment:
Q  13 aatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    |||||||||||| || |||||| |||||||   |||||||||  | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||     
T  8102696 aatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagcc 8102795  T
Q  113 ttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttct 194  Q
    || ||||| || || || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| || | ||||||||    
T  8102796 ttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttct 8102877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 8581754 - 8581824
Alignment:
Q  38 aactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 108  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581754 aactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 39985708 - 39985830
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 145  Q
    |||||| || |||||||||||||| |||||||| ||||| |||||||| || || || || || |||||||| || ||||| || ||||||||||| ||     
T  39985708 aacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagc 39985807  T
Q  146 agagaaacatcgaaagttccacc 168  Q
    | ||| ||||| ||||| |||||    
T  39985808 aaagagacatcaaaagtaccacc 39985830  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 7877862 - 7877773
Alignment:
Q  23 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  7877862 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 8570374 - 8570435
Alignment:
Q  47 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 108  Q
    ||||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570374 acaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  47 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  61 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 125  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 5445754 - 5445648
Alignment:
Q  149 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 248  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  249 taggctc 255  Q
    |||||||    
T  5445654 taggctc 5445648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 17705845 - 17705797
Alignment:
Q  45 aaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705845 aaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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