View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5738_low_2 (Length: 874)
Name: NF5738_low_2
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 412 - 862
Target Start/End: Original strand, 27324176 - 27324620
Alignment:
| Q |
412 |
gggaatagtgcttttcaattgcaaataactaagagatatttaattagacgaagcatttgctttggtgcttgatttgatcgattttaaagtacaacaaaat |
511 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||| | |||||||| |
|
|
| T |
27324176 |
gggaatagtgtttttcaattgcaaataa----gagagatttaattagacgaagcat--gctttggtgcttgctttgattgattttaaagaaaaacaaaat |
27324269 |
T |
|
| Q |
512 |
caacaatgggaaaaataaataagaaaaacttatatgctttggtgtttgcatttgagagg-tttcacattgatagttcccaattgcatcgtccatggtggt |
610 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
27324270 |
caacaatggaaaaaataaataagaaaaacttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggt |
27324369 |
T |
|
| Q |
611 |
tcatattggttggttggtggaaatcatcatccatggctgtgtgaagacagtgtagatgcaagcaacaaaggaatcatgtatcaggtggattttgaggttg |
710 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27324370 |
tcatattg-ttggttggtggaaatcatcatccatgggtgtgtgaagacagtgtagatgcaggcaacaaaggaatcatgtatcaggtggattttgaggttg |
27324468 |
T |
|
| Q |
711 |
ttgttttatcacgtgaattcagatcacatatacttaatttacctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaacgagtaaggat |
810 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27324469 |
ttgttttatcacatgaattcagatcacatatacttaatttacctaacgtgaattaaaatcacgtaccattcataagagtgggaaggaaatgagtaaggat |
27324568 |
T |
|
| Q |
811 |
aattttggtattatgaataaattttaattgaatttggatgtaacttgatatt |
862 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27324569 |
aattttggtattatgaataaattttaattgaatttgggtgtaacttgatatt |
27324620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 107 - 368
Target Start/End: Original strand, 27323870 - 27324131
Alignment:
| Q |
107 |
taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27323870 |
taacaccccataatgatctagttgcaccctaaaatggcgaaaatacccatattataaaattaaattttcaaaatcaaacccttgccctcgtaaacccttt |
27323969 |
T |
|
| Q |
207 |
tcacgttttcttccggcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagat |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
27323970 |
tcacgttttcttcctgcttttatttctgaagaacaagaacttattataacgctttcaatgaatcaattgtagcacaaattctagttttcaaacttaagat |
27324069 |
T |
|
| Q |
307 |
tgttttttcttgatttaatggatttgggtgcaattctagcttttcaattgttcggacataag |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27324070 |
tgttttttcttgatttaatggatttgggtgcaattctagcttttcaattgttcggacataag |
27324131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 412 - 862
Target Start/End: Original strand, 28358971 - 28359415
Alignment:
| Q |
412 |
gggaatagtgcttttcaattgcaaataactaagagatatttaattagacgaagcatttgctttggtgcttgatttgatcgattttaaagtacaacaaaat |
511 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||| |||||||||| | |||||||| |
|
|
| T |
28358971 |
gggaatagtgtttttcaattgcaaataa----gagagatttaattagacgaagcat--gctttggtgcttgctttgattgattttaaagaaaaacaaaat |
28359064 |
T |
|
| Q |
512 |
caacaatgggaaaaataaataagaaaaacttatatgctttggtgtttgcatttgagagg-tttcacattgatagttcccaattgcatcgtccatggtggt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
28359065 |
caacaatgggaaaaataaataagaaaaacttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggt |
28359164 |
T |
|
| Q |
611 |
tcatattggttggttggtggaaatcatcatccatggctgtgtgaagacagtgtagatgcaagcaacaaaggaatcatgtatcaggtggattttgaggttg |
710 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28359165 |
tcatattg-ttggttggtggaaatcatcatccatgggtgtgtgaagacaatgtagatgcaggcaacaaaggaatcatgtatcaggtggattttgaggttg |
28359263 |
T |
|
| Q |
711 |
ttgttttatcacgtgaattcagatcacatatacttaatttacctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaacgagtaaggat |
810 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28359264 |
ttgttttatcacgtgaattcagatcacatatacttaatttacctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaatgagtaaggat |
28359363 |
T |
|
| Q |
811 |
aattttggtattatgaataaattttaattgaatttggatgtaacttgatatt |
862 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
28359364 |
aattttgatattatgaataaattttaaatgaatttgggtgtaacttgatatt |
28359415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 111 - 368
Target Start/End: Original strand, 28358670 - 28358926
Alignment:
| Q |
111 |
accccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttttcac |
210 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
28358670 |
accccataatgatctagttgcatcctaaaatggcgaaaatacccatattataaaattaaattttcaaaatcaaacc-ttaccctcgtaaacccttttcac |
28358768 |
T |
|
| Q |
211 |
gttttcttccggcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagattgtt |
310 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28358769 |
gttttcttcctgcttttatttctgaagaacaagaacttattataacgctttcaatgaatcaattgtagcacaaattctagttttcaaacttaagattgtt |
28358868 |
T |
|
| Q |
311 |
ttttcttgatttaatggatttgggtgcaattctagcttttcaattgttcggacataag |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28358869 |
ttttcttgatttaatggatttgggtgcaattctagcttttcaattgttcggacataag |
28358926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 244 - 359
Target Start/End: Original strand, 43457119 - 43457231
Alignment:
| Q |
244 |
aacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagattgttttttcttgatttaatggatttgggtgcaattct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||| || ||||||||||||||| ||||||||| |
|
|
| T |
43457119 |
aacttattataatgctttcaatgaatcaattgtagcacaaattctagtttgtaaacacaag---tttttttatttatttaatggatttggttgcaattct |
43457215 |
T |
|
| Q |
344 |
agcttttcaattgttc |
359 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
43457216 |
agcttttcaattgttc |
43457231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 43456980 - 43457054
Alignment:
| Q |
114 |
ccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaaccct |
188 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
43456980 |
ccataatgatctagttacaccctaaaatggccaaaataccattattgtaaaattaaattttcaaaatcaaaccct |
43457054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 309; Significance: 1e-173; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 412 - 862
Target Start/End: Original strand, 3500408 - 3500854
Alignment:
| Q |
412 |
gggaatagtgcttttcaattgcaaataactaagagatatttaattagacgaagcatttgctttggtgcttgatttgatcgattttaaagtacaacaaaat |
511 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||| |||||| |||||||||| | |||||||| |
|
|
| T |
3500408 |
gggaatagtgtttttcaattgcaaataa----gagagatttaattagacgaagcatgt--tttggtgcttgctttgattgattttaaagaaaaacaaaat |
3500501 |
T |
|
| Q |
512 |
caacaatgggaaaaataaataagaaaaacttatatgctttggtgtttgcatttgaga-ggtttcacattgatagttcccaattgcatcgtccatggtggt |
610 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |||||| | || |
|
|
| T |
3500502 |
caacaatgg-aaaaataaataagaaaaacttatatgctttggtgtttgcatttgagaaggtttcacactgatagttcgcaattgcatcctccatgatagt |
3500600 |
T |
|
| Q |
611 |
tcatattggttggttggtggaaatcatcatccatggctgtgtgaagacagtgtagatgcaagcaacaaaggaatcatgtatcaggtg---gattttgagg |
707 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
3500601 |
tcatattg-ttggttggtggaaatcatcatccatggttgtgtgaagacagtgtagatgcaggcaacaaatgaatcatgtatcaggtggtggattttgagg |
3500699 |
T |
|
| Q |
708 |
ttgttgttttatcacgtgaattcagatcacatatacttaatttacctaacgtgaattaaaatcacgtatcattcataagagtgggaaggaaacgagtaag |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3500700 |
ttgttgttttatcacgtgaattcagatcacgtatacttaatttacctaacgtgaattaaaatcatgtatcattcataagagtgggaaggaaatgagtaag |
3500799 |
T |
|
| Q |
808 |
gataattttggtattatgaataaattttaattgaatttggatgtaacttgatatt |
862 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3500800 |
gataattttgttattatgaataaattttaattgaatttgggtgtaacttgatatt |
3500854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 222 - 368
Target Start/End: Original strand, 3500219 - 3500364
Alignment:
| Q |
222 |
gcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagattgttttttcttgatt |
321 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
3500219 |
gcttttatttctgaagaacatgaacttattataacgctttcaatgaatcaattgaagcataaattttagttttcaaacttaagatt-ttttttcttgatt |
3500317 |
T |
|
| Q |
322 |
taatggatttgggtgcaattctagcttttcaattgttcggacataag |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500318 |
taatggatttgggtgcaattctagcttttcaattgttcggacataag |
3500364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 3500079 - 3500192
Alignment:
| Q |
107 |
taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
3500079 |
taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattgtaaaattaaatcttcaaaatcaaacccttgccctcgtaaacctttt |
3500178 |
T |
|
| Q |
207 |
tcacgttttcttcc |
220 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
3500179 |
ttacgttttcttcc |
3500192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 29951303 - 29951341
Alignment:
| Q |
147 |
aaatacccttattataaaattaaattttcaaaatcaaac |
185 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
29951303 |
aaatacccctattataaaattaaatttacaaaatcaaac |
29951341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 48393606 - 48393695
Alignment:
| Q |
15 |
tcaattttttgagttagaaagaaaattgcgagtgaaataaaataatcaatgcgcctgcgtgggtactatttaaatccacaaccttttaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48393606 |
tcaattttttgagttagaaagaaaattgcgactgaaataaaataatcaatgcgcctgcgtgggtactatttaaatccacaaccttttaaa |
48393695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 33013517 - 33013417
Alignment:
| Q |
107 |
taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttt |
206 |
Q |
| |
|
||||||||||||||||||||||| || | |||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33013517 |
taacaccccataatgatctagttacatcttaaaatggctaaaatacccttattgtgaaattaaattttcaaaatcaaacccttgccctcataaacccttt |
33013418 |
T |
|
| Q |
207 |
t |
207 |
Q |
| |
|
| |
|
|
| T |
33013417 |
t |
33013417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 33013378 - 33013314
Alignment:
| Q |
222 |
gcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaatt |
286 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33013378 |
gcttttatttctcaagaacatgaacttattataatgctttcaatgaatcaattgtagcacaaatt |
33013314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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