View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_23 (Length: 234)
Name: NF5738_low_23
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 8535324 - 8535508
Alignment:
| Q |
17 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaacctcattcgtccaaacaaataataatgattcacttttaaaaaggcag |
116 |
Q |
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| T |
8535324 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaacctcattcgtccaaacaaataataatgattcacttttaaaaaggcag |
8535423 |
T |
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| Q |
117 |
agaaaac-aaaaaatacagaacataaacgtgcattttgactgttgcagaactggtccaatgacatgcatggagtggacggtagga |
200 |
Q |
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| T |
8535424 |
agaaaacaaaaaaatacagaacataaacgtgcactttgactgttgcagaactggtccaatgacatgcatgcagtggacggtagga |
8535508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 8600563 - 8600747
Alignment:
| Q |
17 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaacctcattcgtccaaacaaataataatgattcacttttaaaaaggcag |
116 |
Q |
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| T |
8600563 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaacctcattcgtccaaacaaataataatgattcacttttaaaaaggcag |
8600662 |
T |
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| Q |
117 |
agaaaac-aaaaaatacagaacataaacgtgcattttgactgttgcagaactggtccaatgacatgcatggagtggacggtagga |
200 |
Q |
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| T |
8600663 |
agaaaacaaaaaaatacagaacataaacgtgcactttgactgttgcagaactggtccaatgacatgcatgcagtggacggtagga |
8600747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 8547624 - 8547572
Alignment:
| Q |
17 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaa |
69 |
Q |
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| T |
8547624 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaa |
8547572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 8612863 - 8612811
Alignment:
| Q |
17 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaa |
69 |
Q |
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| T |
8612863 |
ccaatatcatcatttattcactcacatgtgaactttttctcttttgactccaa |
8612811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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