View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_4 (Length: 601)
Name: NF5738_low_4
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 5 - 593
Target Start/End: Original strand, 6587530 - 6588120
Alignment:
| Q |
5 |
gccaaaaatacatatacaaacattaagatggatcgcatatcgaaattggcatcacaaaaggcggtagtgatctttagcaagagttcatgtgggatgagcc |
104 |
Q |
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| T |
6587530 |
gccaaaaatacatatacaaacattaagatggatcgcatatcgaaattagcatcacaaaaggcggtagtgatctttagcaagagttcatgtgggatgagcc |
6587629 |
T |
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| Q |
105 |
atgcaattaagagactattttatgagcaaggtgttggtccagcaatctatgagctagatgaagataagagggggaaggaaatggaatgggctctcataag |
204 |
Q |
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| T |
6587630 |
atgcaattaagagactattttatgagcaaggtgttggtccagcaatctatgaactagatgaagataagagggggagggaaatggaatgggctctcataag |
6587729 |
T |
|
| Q |
205 |
attaggatgcaaccctagtgttccagcagtgttcattggtggcaagtttgtgggttcagccaacataatcatgacccttcatctcaatggctcactcaag |
304 |
Q |
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| T |
6587730 |
attaggatgcaaccctagtgttccagcagtgttcattggtggcaagtttgtgggttcagccaacataatcatgacccttcatctcaatggctcactcaag |
6587829 |
T |
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| Q |
305 |
aaaatgcttagagaagctggtgcactttggctttaggaaaacttgaaatatggaagctcgcattctagtgcaaatgcaaacagccaaaaattgccttttt |
404 |
Q |
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| T |
6587830 |
aaaatgcttagagaagctggtgcactttggctttaggaaaacttgaaatatggaagctcgcattctagtgcaaatgcaaacagccaaaaatggccttttt |
6587929 |
T |
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| Q |
405 |
tatataatatcctaaccaagccctc---nnnnnnnngtgagaccttgcggctttaagaatatgcattgtattagaataatctttgttacctccaatataa |
501 |
Q |
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| T |
6587930 |
tatataatatcctaaccaagccctctttttttttttgtgagaccttgcggctttaagaatatgcattgtattagaataatctttgttacctccaatataa |
6588029 |
T |
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| Q |
502 |
ttttgagttgtacttctgaaactctgtgtacattgtttctcctttttcttttcttcacgaattgagtatttgcaactatataaattcatctc |
593 |
Q |
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| T |
6588030 |
ttttgagttgtacttctgaaactttgtgtgcattgtttctccttttt-ttttcttcacgaattgagtatttgcaactatataaattcatctc |
6588120 |
T |
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