View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_6 (Length: 550)
Name: NF5738_low_6
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Original strand, 40750599 - 40751118
Alignment:
| Q |
19 |
ccaagttcatggaatctgagaaaaccgttagtagaaacggtaacaagttgaaattgttctccggcaccgctaatcctgctctgtcccaggtataacttcc |
118 |
Q |
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| T |
40750599 |
ccaagttcatggaatctgagaaaaccgttagtagaaacggtaacaagttgaaattgttctccggcaccgctaatcctgctctgtcccaggtacaacttcc |
40750698 |
T |
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| Q |
119 |
actttaatttactttcatttttaaatgtattgtttacttagttatgtagctccgacacttctgatcgtagaagtgtttagtgttcgacacgtaacactag |
218 |
Q |
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| T |
40750699 |
actttaatttactttcatttttacatgtattgtttacttagttatgttgctccgacatttctgatcgtagaagtgtttagtgtttgacacgtaacacatg |
40750798 |
T |
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| Q |
219 |
tccgtgtttgacaccgacacgacaccacacatgcaatttcatttaattatgtcatttttaaaaataattatgggtatatgtgttagtgtcatgtttgttg |
318 |
Q |
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| T |
40750799 |
tcc----atgacactgacacgactccacacaagcaattacatttaattatgtcattttttaaaataattatgggtatctgtgttagtgtcatgtttggtg |
40750894 |
T |
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| Q |
319 |
tctgtgtcaatgattcatattttcatccagcatcaaaaattatgtacaa--nnnnnnnnnnnnnngtgtgtgtataaatatgtacaaacatgttaggtac |
416 |
Q |
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| T |
40750895 |
tctgtgttaatgattcatattttcatccagcatcaaaaattatgtacaattttttttttttttgtgtgtgtgtataaatatgtacaaacatgttaggtac |
40750994 |
T |
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| Q |
417 |
ggtaaaagacatgttggtgtttatagaactagttggtcccttgcaatgaaacatgatttgcatgacccatctttttattgggcaggtttcagatgagaaa |
516 |
Q |
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| T |
40750995 |
ggtaaaagacatgttggtgtttatagaactagttggtcccttgcaatgaaacatgatttgcatgacccatctttttattgggcaggtttcagatgagaaa |
40751094 |
T |
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| Q |
517 |
tctttgctcttttataactctgtg |
540 |
Q |
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| T |
40751095 |
tctttgttcttttataactttgtg |
40751118 |
T |
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