View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_7 (Length: 542)
Name: NF5738_low_7
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 24598833 - 24599343
Alignment:
| Q |
18 |
attatgcacattgtctagcaaccctttcatgcctttatatacttcatctatttattcggtttgattaactaattctaacatcttttcaactataaatatc |
117 |
Q |
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| T |
24598833 |
attatgcacattgtctagctaccctttcatgcctttatatacttcatctatttattcggtttgattaactaattctaagatcttttcaactataaatatc |
24598932 |
T |
|
| Q |
118 |
ttgtcttgaataaagtaataaactcatcatatcatatgtgcaaatttgtgattcgagcgggagtgattagtccacattcgataaaaattggccaaataaa |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
24598933 |
ttgtcttgaataaaataataaactcatcatatcatatgtgcaaatttgtgattcgagcgggagtggttagtccacattagataaaaattggccaaataaa |
24599032 |
T |
|
| Q |
218 |
ttaaatgatgtataagtcttaaaatattctctnnnnnnnntcttaccgtatatgattcatatatttaatgttgtaagattatagatggaggtgtaatgct |
317 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24599033 |
ttaaatgatgtataactcttaaaatattctctaaaaaatatcttaccgtatatgattcatatatttaatgttgtaagattttagatggaggtgtaatgct |
24599132 |
T |
|
| Q |
318 |
atgactcgtaagtgttttgattatttgttcgttgttcacgatgctctctaatcttcgttaagtacaacacccacaccacacttatgatctgtgatcgtat |
417 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| |
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| T |
24599133 |
atgactcttaagtgttttgattatttgttcgatgttcacgatactctctaatcttcgttgagtacaacacccacacc-----tatgatctctgatcatat |
24599227 |
T |
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| Q |
418 |
ttttaagattgaattggaacatgaaatcaaagattaaaaaaggcatttataggttgaagagggtgggtccaacactagatgctagaggtgggttcacttt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24599228 |
ttttaagattgaattggaacatgaaatcaaagattaaaataggaatttatacgctgaagagggtgggtccaacactagatgccagaggtgggttcacttt |
24599327 |
T |
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| Q |
518 |
ttctgatgatgatgtc |
533 |
Q |
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|||| ||||||||||| |
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| T |
24599328 |
ttctaatgatgatgtc |
24599343 |
T |
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