View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5738_low_8 (Length: 415)
Name: NF5738_low_8
Description: NF5738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5738_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 30688423 - 30688028
Alignment:
| Q |
1 |
tacaattttgatcgtattaactacattttaccgtaatataaaagtttgcagtgtaacattaactggaatataaaaccatagtttgctttgtagttagaag |
100 |
Q |
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| T |
30688423 |
tacaattttgatcgcattgactacattttaccgtaatataaaagtttgcagtgtaacgttaattggaatttaaaaccatagtttgctttgtagttagaag |
30688324 |
T |
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| Q |
101 |
tagtatgaataaagcnnnnnnnttatttaaggggaccggttttccttaattattttgttcttaggtttgttatgttcacaaattttcaccctcaataaat |
200 |
Q |
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| T |
30688323 |
taggatgaataaagcaaaaaaattatttaaggggaccggttttccttaattattttgttcttagatttgttatgttcacaaattttcaacctcaataaat |
30688224 |
T |
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| Q |
201 |
ctcatgattttcatctattaaattgtaaaatctcactcnnnnnnnggttgtagataaaaggtgggaggttatatatatgaacttttgtgtcacatgagtt |
300 |
Q |
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| T |
30688223 |
ctcatgattttcatctataaaattgtaaaatctcactctttttttggttgtagataaaaggtgggaggttatat----gaacttttgtgtcacatgagtt |
30688128 |
T |
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| Q |
301 |
gacttcaccatgatttcaatcttacatatggatatatatgaaaaaatttggtgtactcaaatacatgttatcttcctagtat-aatattagtatcaaaac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
30688127 |
gacttcaccatgatttcaatcttacatatggatatatatgaaaaaatttggggtactcaaatacatgttatcttcctagtataaatattaatatcaaaac |
30688028 |
T |
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