View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5739F-Insertion-1 (Length: 1187)
Name: NF5739F-Insertion-1
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5739F-Insertion-1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 888; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 888; E-Value: 0
Query Start/End: Original strand, 213 - 1187
Target Start/End: Original strand, 31998570 - 31999546
Alignment:
| Q |
213 |
cgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998570 |
cgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaag |
31998669 |
T |
|
| Q |
313 |
agatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttgata |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998670 |
tgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttgata |
31998769 |
T |
|
| Q |
413 |
taatttgtgttgtcacagcttgattaaaacaaaaagaaataaataaaagattttgataaattaatatctatctggtttgtttttgtctaaccggcacata |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998770 |
taatttgtgttgtcacagcttgattaaaacaaaaagaaattaataaaagattttgagaaattaatatctatctggtttgtttttgtctaaccggcacata |
31998869 |
T |
|
| Q |
513 |
tcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcaatcatcattagaattttagacgatttttaaatatagt |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998870 |
tcatgtcactatctgaacgatgaggacgtggatcagagtttctacttatagaggataacatcgatcatcattagaattttagacgatttttaaatatagt |
31998969 |
T |
|
| Q |
613 |
tgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcattgactgcctag |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998970 |
tgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcattgactgcctag |
31999069 |
T |
|
| Q |
713 |
aaaactccacacaagagttgttacataaaccaattaggatcctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactg |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31999070 |
aaaactccacacaagagttgttacataaaccaattaggctcctacatgcaacaagaatagcgcctacttccgtctaatcccgagagtgtctattaaactg |
31999169 |
T |
|
| Q |
813 |
gtctacaaccaacttgagtccatgnnnnnnntgacatgattgaaactcaactccacaatccattctattccaaagccgcaagacgatttttaaatgttaa |
912 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31999170 |
gtctacaaccaacttgagtccatgaaaaaaatgacatgattgaaactcaactccacaatcccttctattccaaagccgcaagacgatttttaaatgttaa |
31999269 |
T |
|
| Q |
913 |
tacactaaataccatctatcaaaagaggtctataacagaattgacttttaattaatacctacaaactttttcactaacctgccccacattttacaaaagt |
1012 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31999270 |
tacactatataccatctatcaaaagaggtctataacagaattgacttttaattaatacctacaaactttttcactaacctgccccacattttacgaaagt |
31999369 |
T |
|
| Q |
1013 |
ctaaaactgactcccgtgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaa |
1112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31999370 |
ctaaaactgactcccgtgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaa |
31999469 |
T |
|
| Q |
1113 |
gagaggctttgtccattaaagtaggaattgctctgccagttttggcccc-atttc-tgacatgggttgccagctagt |
1187 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
31999470 |
gagaggctttgtccattaaggtaggaattgctctgccagttttggccccaatttcttgacatgggttgccagctagt |
31999546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 31998570 - 31998774
Alignment:
| Q |
8 |
cgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998570 |
cgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaag |
31998669 |
T |
|
| Q |
108 |
agatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttgata |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31998670 |
tgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattacacaactaaatgttgata |
31998769 |
T |
|
| Q |
208 |
taatt |
212 |
Q |
| |
|
||||| |
|
|
| T |
31998770 |
taatt |
31998774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1029 - 1181
Target Start/End: Original strand, 27487973 - 27488127
Alignment:
| Q |
1029 |
tgaaaggtctgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccat |
1128 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||| ||| | ||||||| |||||||||||||| || || |||| ||| |||||| |||||||| |
|
|
| T |
27487973 |
tgaaaggtttgaccaaattgccaatttgctggtgccacattgaaacttgtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccat |
27488072 |
T |
|
| Q |
1129 |
taaagtaggaattgctctgccagttttggcccc-atttc-tgacatgggttgcca |
1181 |
Q |
| |
|
||| || || ||||| ||||| ||||| |||| ||||| |||||| |||||||| |
|
|
| T |
27488073 |
taagataagagttgctttgccaattttgaccccaatttcttgacattggttgcca |
27488127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1038 - 1181
Target Start/End: Original strand, 27476724 - 27476869
Alignment:
| Q |
1038 |
tgaccgaattgccaattagctggtgccacgttgtagcttgtcacagttctaccatcaccagtggttactttaaaagagaggctttgtccattaaagtagg |
1137 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||| | || |||| |||||||||||||| || || |||| ||| |||||| ||||||||||| || | |
|
|
| T |
27476724 |
tgaccaaattgccaatttgctggagccacattgaaactggtcatagttctaccatcacttgttgtaacttgaaatgagagggattgtccattaagataag |
27476823 |
T |
|
| Q |
1138 |
aattgctctgccagttttggcccc-atttc-tgacatgggttgcca |
1181 |
Q |
| |
|
| ||||| ||||| |||||||||| ||||| |||||| |||||||| |
|
|
| T |
27476824 |
agttgctttgccaattttggccccaatttcttgacattggttgcca |
27476869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
53 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
152 |
Q |
| |
|
|||||| | ||||||| | |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||| | || ||||||||||||||| |
|
|
| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
|
| Q |
153 |
aattgtggta |
162 |
Q |
| |
|
|| ||||||| |
|
|
| T |
42613191 |
aactgtggta |
42613200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
258 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
357 |
Q |
| |
|
|||||| | ||||||| | |||||||||||||||||||||||| || |||||||||||||| ||||| ||||||| | || ||||||||||||||| |
|
|
| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
|
| Q |
358 |
aattgtggta |
367 |
Q |
| |
|
|| ||||||| |
|
|
| T |
42613191 |
aactgtggta |
42613200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 615 - 694
Target Start/End: Complemental strand, 17231961 - 17231882
Alignment:
| Q |
615 |
ttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
694 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | |||||| | || |||| |||||| || |||| |||||||||||||| |
|
|
| T |
17231961 |
ttttacaagaggaaaactaattcctatcattgatgatcaagttattaatatatgttggaatatcataataaagatgagaa |
17231882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 754 - 828
Target Start/End: Complemental strand, 30612429 - 30612355
Alignment:
| Q |
754 |
ctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactggtctacaaccaacttg |
828 |
Q |
| |
|
|||||| || |||| ||||||||||||| ||| | ||| |||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
30612429 |
ctacatttagcaagaatagcgcctactttcgtgttatcttgagagtgtcgattaaattggtctacgaccaacttg |
30612355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University