View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5739F-Insertion-10 (Length: 528)
Name: NF5739F-Insertion-10
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5739F-Insertion-10 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 258 - 528
Target Start/End: Complemental strand, 11959709 - 11959440
Alignment:
| Q |
258 |
tttgttttcaaagataccacgtgttgaagtttacnnnnnnncttcttctttccactcaagttgaattctagtctacttcatgtttcatttatttagcatt |
357 |
Q |
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| T |
11959709 |
tttgttttcaaa-ataccacgtgttgaagtttactttttttcttcttctttccactcaagttgaattctagtctacttcatgttttatttatttagcatt |
11959611 |
T |
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| Q |
358 |
tataagtacggttaaaatttagtaaaaaataagttcgttaaatttaattagttacatacattcatttaatcttacaagttacataggggaaatgaatttt |
457 |
Q |
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| T |
11959610 |
tataagtacggttaaaatttagtaagaaataagttcgttaaatttaattagttacatacattcatttaatcttacaagttacataggggaaatgaatttt |
11959511 |
T |
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| Q |
458 |
ttctaagttgacaagaagtgtagacagacactttaataggagacaatttaaagtggacccaatgtaccaag |
528 |
Q |
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| T |
11959510 |
ttctaagttgacaagaagtgtagacagacactttaataggagacaatttaaagtggacccaatgtaccaag |
11959440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 11961595 - 11961397
Alignment:
| Q |
8 |
taaagtggatttggtggaagtgcatttgataagtgacatcaataacgaattgggtggtgaacatcagtcaccacttgctaatgaaagcacaaagggagat |
107 |
Q |
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| T |
11961595 |
taaagtggatttggtggaagtgcatttgataagtgacatcaataacgaattgggtggtgaacatcagtcaccacttgctaatgaaaacacaaagggagat |
11961496 |
T |
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| Q |
108 |
atgtttacttacagtggtttatgatagtccacgggagaatgagagacgtgctacatggattaagtggtacgacaatgctagtagtattcaagagcccgg |
206 |
Q |
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| T |
11961495 |
atggttacttacagtggtttatgctagtccacgggagaatgagagacgtgctacatggattaagtggtatgacaatgctagtagtattcaagagcccgg |
11961397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 322 - 400
Target Start/End: Complemental strand, 11853885 - 11853807
Alignment:
| Q |
322 |
attctagtctacttcatgtttcatttatttagcatttataagtacggttaaaatttagtaaaaaataagttcgttaaat |
400 |
Q |
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| T |
11853885 |
attccagtttacttcatgttttatttatttggcatttataagtatggttaaaatttagtaaaaaataaattggttaaat |
11853807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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