View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5739F-Insertion-12 (Length: 470)

Name: NF5739F-Insertion-12
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5739F-Insertion-12
NF5739F-Insertion-12
[»] chr8 (1 HSPs)
chr8 (8-470)||(34426595-34427057)


Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 470
Target Start/End: Complemental strand, 34427057 - 34426595
Alignment:
Q  8 atattgacacgatctttttactttactgtgttagatttgacgattccatgcctgaaaacaccagagaggtataaactatgaaatattatctcatatcttg 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34427057 atattgacacgatctttttactttactgtattagatttgacgattccatgcctgaaaacaccagagaggtataaactatgaattattatctcatatcttg 34426958  T
Q  108 attaactttgtactcctgatgtcaaacatcctgtgccctttatgtgattgacaatgcaaatgaacagcatgaaatttgatgttgcctcaaccttaaatat 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34426957 attaactttgtactactgatgtcaaacatcctgtgccctttatgtgattgacaatgcaaatgaacagcatgaaatttgatgttgcctcaaccttaaatat 34426858  T
Q  208 tgtagctttttagataatcctttcttgacttgaccaatggtctcagactcgattattagtttagatattttcagattcttaatagcatagatttgagtct 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34426857 tgtagcttgttagataatcctttcttgacttgaccaatggtctcagactcgattattagtttagatattttcagattcttaatagcatagatttgagtct 34426758  T
Q  308 tttgccactctcatacatagtcacagataaaaagaacttggaatagtttacatgcctcaagatattttcgatcagaaattttcacaacagtgctagtttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34426757 tttgccactctcatacatagtcacagataaaaagaacttggaatagtttacatgcctcaagatattttcgatcagaaattttcacaacagtgctagtttc 34426658  T
Q  408 agtatcaataccactttgtatcatctcaattatttgggagctgagactgtctttttggttttt 470  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  34426657 agtatcaataccactttgtatcatctcaataatttgggaactgagactgtctttttggttttt 34426595  T

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