View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5739F-Insertion-13 (Length: 465)
Name: NF5739F-Insertion-13
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5739F-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 452
Target Start/End: Complemental strand, 32778643 - 32778198
Alignment:
| Q |
7 |
aagcacaatatgtattaaattcaccatatctattgcttttctaacaaatcagaaaaagattaacaccttctggatgtggatccaaatagaaattttctac |
106 |
Q |
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| T |
32778643 |
aagcacaatatgtattaaattcaccatatctattgcttgtctaacaaatcagaaaaagattaacaccttctggatgtggatccaaatagaaattttctac |
32778544 |
T |
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| Q |
107 |
atttagttagaggtttaagtatttagtcattccttttctcatgggccatgacagaaaaagatcagccactttttcgattttgcacatcctaaatctttga |
206 |
Q |
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| T |
32778543 |
atttagttagaggtttaagtatttagtcattccttttctcatgggccatgacagaaaaagattagccactttttcgattttgcacatcctaaatctttga |
32778444 |
T |
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| Q |
207 |
cctattgcaggataaacaatagnnnnnnnttgttttgcatctttctaaaatacagtttcactggcaaactttaaaaaatgacacgctttatttatctaaa |
306 |
Q |
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| T |
32778443 |
tctattgcaggataaacaatagaaaaaaattgttttgcatctttctaaaatacagtttcactggcaaactttaaaaaatgacacgctttatttatctaaa |
32778344 |
T |
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| Q |
307 |
gatctcggttgtaaattagttctgaatcttgttttattataatcaatttagaagttttaaattgctgttggtgaaagtgaaacttaagcccaattttgaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32778343 |
gatctcggttgtaaattagttctgaatcttgttttattataatcaatttagaagttttaaattgctgttggtgaaagtgaaacttaagcccgattttgaa |
32778244 |
T |
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| Q |
407 |
gtgcacacaaaaggaacctgattcatataacatgatgctaatgcac |
452 |
Q |
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| T |
32778243 |
gtgcacacaaaaggaacctgattcagataacatgatgctaatgcac |
32778198 |
T |
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