View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5739F-Insertion-15 (Length: 352)

Name: NF5739F-Insertion-15
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5739F-Insertion-15
NF5739F-Insertion-15
[»] chr8 (12 HSPs)
chr8 (96-352)||(3718227-3718483)
chr8 (198-352)||(3771221-3771375)
chr8 (198-352)||(3778882-3779036)
chr8 (244-352)||(3706866-3706974)
chr8 (42-177)||(21602116-21602251)
chr8 (7-100)||(3714902-3714989)
chr8 (42-165)||(7680950-7681073)
chr8 (245-342)||(3700186-3700283)
chr8 (42-163)||(33508622-33508743)
chr8 (46-176)||(41303093-41303225)
chr8 (46-139)||(36754636-36754729)
chr8 (45-177)||(6393814-6393945)
[»] chr4 (10 HSPs)
chr4 (42-167)||(24806670-24806794)
chr4 (42-169)||(13834366-13834493)
chr4 (42-113)||(56095115-56095186)
chr4 (42-176)||(11839800-11839934)
chr4 (43-169)||(32934081-32934207)
chr4 (42-129)||(51150919-51151006)
chr4 (44-114)||(26499403-26499473)
chr4 (42-169)||(45615724-45615852)
chr4 (46-139)||(38932761-38932854)
chr4 (46-118)||(312705-312777)
[»] chr6 (4 HSPs)
chr6 (42-167)||(10067661-10067786)
chr6 (42-169)||(25085025-25085152)
chr6 (42-148)||(9307404-9307509)
chr6 (42-95)||(16431597-16431650)
[»] chr1 (3 HSPs)
chr1 (42-139)||(49880169-49880266)
chr1 (44-167)||(30050536-30050659)
chr1 (42-165)||(27463847-27463970)
[»] chr5 (7 HSPs)
chr5 (42-166)||(8206233-8206357)
chr5 (42-113)||(11497966-11498037)
chr5 (42-95)||(11534906-11534959)
chr5 (42-113)||(11505322-11505393)
chr5 (42-113)||(11512716-11512787)
chr5 (42-113)||(11520092-11520163)
chr5 (42-113)||(11527500-11527571)
[»] chr2 (6 HSPs)
chr2 (42-130)||(7165642-7165730)
chr2 (42-167)||(40124305-40124430)
chr2 (42-127)||(6788301-6788386)
chr2 (44-95)||(20966132-20966183)
chr2 (42-95)||(17742583-17742636)
chr2 (46-167)||(41746368-41746488)
[»] chr3 (3 HSPs)
chr3 (42-167)||(14984447-14984572)
chr3 (42-152)||(34979116-34979226)
chr3 (42-92)||(40954492-40954542)
[»] chr7 (4 HSPs)
chr7 (44-113)||(8062786-8062855)
chr7 (42-167)||(39608356-39608481)
chr7 (46-120)||(5198027-5198101)
chr7 (46-178)||(5362274-5362406)
[»] scaffold0284 (1 HSPs)
scaffold0284 (46-118)||(2457-2529)
[»] scaffold0114 (1 HSPs)
scaffold0114 (46-118)||(35035-35107)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 96 - 352
Target Start/End: Original strand, 3718227 - 3718483
Alignment:
Q  96 aaggggcttttttgactaatgaaatacacaatcaacgacaattttcaaatttcgatagattaagggactattattgctacttaccaaaatgactattacc 195  Q
    ||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||    
T  3718227 aagggactcttttgattaatgaagtacacaatcaacgacaattttcaaatttcgatacattgatggaccattattgctacttaccaaaatgactattacc 3718326  T
Q  196 cttatataatttgaatgaccaaaccataagccacaaacgatcatctgcaattccatggctaaagcaactcatatagcagtagtttcaattcctctattta 295  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  3718327 cttatataatttgaatgaccaaaccataaaccacaaacgatcaactgcaatttcatggctaaaggaactcatatagcagtagtttcaattcctctattta 3718426  T
Q  296 gccaccaaagttctattattgagctttgcaagagattaattcatctcgatcaccaca 352  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  3718427 gccaccaaagttctattattgagttttgcaagagattaattcatctccatcaccaca 3718483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 3771375 - 3771221
Alignment:
Q  198 tatataatttgaatgaccaaaccataagccacaaacgatcatctgcaattccatggctaaagcaactcatatagcagtagtttcaattcctctatttagc 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  3771375 tatataatttgaatgaccaaaccataagccacaaacgatcaactgcaattctatggctaaaggaactcatatagcagtagtttcaattcctctatttagc 3771276  T
Q  298 caccaaagttctattattgagctttgcaagagattaattcatctcgatcaccaca 352  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||    
T  3771275 caccaaagttctattattgagttctgcaagagactaattcatctccatcaccaca 3771221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 3779036 - 3778882
Alignment:
Q  198 tatataatttgaatgaccaaaccataagccacaaacgatcatctgcaattccatggctaaagcaactcatatagcagtagtttcaattcctctatttagc 297  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||| ||||  |||||||||| | ||||||    
T  3779036 tatataatttgaaagaccaaaccataagccacaaacaatcaactgcagttccatggctaaaacaactcatatagtagtaacttcaattcctgtgtttagc 3778937  T
Q  298 caccaaagttctattattgagctttgcaagagattaattcatctcgatcaccaca 352  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  3778936 caccaaagttctattattgagttttgcaagagactaattcatctccatcaccaca 3778882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 244 - 352
Target Start/End: Original strand, 3706866 - 3706974
Alignment:
Q  244 aattccatggctaaagcaactcatatagcagtagtttcaattcctctatttagccaccaaagttctattattgagctttgcaagagattaattcatctcg 343  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||     
T  3706866 aattccatggctaaaacaactcatatagcagtagtttcaatccctctatttagccatcaaagttctattattgagttttgcaagagactaattcatctcc 3706965  T
Q  344 atcaccaca 352  Q
    |||||||||    
T  3706966 atcaccaca 3706974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 21602116 - 21602251
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||| ||||||||||| || ||||||  |||||||||  |||||||||||||| |||| || |||||| ||||||| | | |||||   ||| |||||     
T  21602116 taagttagtatattgaaggactaatatgacaatattaacgaattattttaatgtcagggactattttgattaatgaagtgcgcaatcggggactattttg 21602215  T
Q  142 aaatttcgatagattaagggactattattgctactt 177  Q
    ||||||||||| ||| |||||| ||||| |||||||    
T  21602216 aaatttcgatatattgagggaccattatggctactt 21602251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 3714902 - 3714989
Alignment:
Q  7 agtaagtacttataagaagtgatatggcaataagctaagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggg 100  Q
    |||||||||||||||| ||||||||| |||||||     |||||| ||| ||||| ||||||| ||||||||| ||||||||||||||||||||    
T  3714902 agtaagtacttataaggagtgatatgacaataag-----taagtacattaaaaga-taatattacaatattaacaaattattttaatgtaaggg 3714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 7680950 - 7681073
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    |||||||| ||||||||| | ||| ||  |||||||||  |||||||||||||| |||| |  |||||||||| ||||| |||||||||  || |||||     
T  7680950 taagtaaggatattgaaatactaagatgacaatattaacgaattattttaatgttagggacgattttgactaacgaaatgcacaatcaaatactatttta 7681049  T
Q  142 aaatttcgatagattaagggacta 165  Q
    |||||| |||| ||| ||||||||    
T  7681050 aaattttgatacattgagggacta 7681073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 3700186 - 3700283
Alignment:
Q  245 attccatggctaaagcaactcatatagcagtagtttcaattcctctatttagccaccaaagttctattattgagctttgcaagagattaattcatctc 342  Q
    |||| ||||||||| ||||||||||||||||| ||||| | |||||||| |||||||||   || || |||||| | ||||||||| | |||||||||    
T  3700186 attcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctc 3700283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 33508622 - 33508743
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| || |||||    ||||||||| || ||||||||||| || |  | |||||| ||||||||| |||| ||||  || |||||     
T  33508622 taagtaagtatattgaaggactaatacgataatattaatgaagtattttaatgtcagagattattttgattaatgaaatgcacactcaataactattttg 33508721  T
Q  142 aaatttcgatagattaagggac 163  Q
    ||||||||||| ||||||||||    
T  33508722 aaatttcgatacattaagggac 33508743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 41303093 - 41303225
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaa--ggggcttttttgactaatgaaatacacaatcaacgacaattttcaa 143  Q
    |||||||||| ||||| ||||||  ||||||||| ||||||||||||||| |  ||| || |||||||||   || | || |||||| ||| ||||| ||    
T  41303093 taagtatattaaaagactaatatgacaatattaacaaattattttaatgttatcgggactattttgactagcaaagtgcataatcaatgactattttaaa 41303192  T
Q  144 atttcgatagattaagggactattattgctact 176  Q
    |||| |||| ||| |||||||||||||| ||||    
T  41303193 attttgatacattgagggactattattgttact 41303225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 36754729 - 36754636
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattt 139  Q
    ||||||||||||| || ||||||  |||||| ||| || ||||| ||||| |||| |  |||||||||||||| || |||||||  ||||||||    
T  36754729 taagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggaccattttgactaatgaactatacaatcagagacaattt 36754636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 177
Target Start/End: Complemental strand, 6393945 - 6393814
Alignment:
Q  45 gtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttcaaa 144  Q
    ||||||||||||||  | ||||||   ||||||||  || ||||||||||| |||  || ||||||||||| || | ||||||||   || ||||| |||    
T  6393945 gtaagtatattgaagaactaatatgataatattaaagaactattttaatgttaggaactattttgactaataaagtgcacaatcatgaactattttgaaa 6393846  T
Q  145 tttcgatagattaagggactattattgctactt 177  Q
    |||||||| ||| | |||| |||||||||||||    
T  6393845 tttcgatacattga-ggaccattattgctactt 6393814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 24806670 - 24806794
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    |||||||||||||||||| | || |||  ||||||||| ||||||||||||||| || | || ||||||||||||||||||| ||| || ||| ||||||    
T  24806670 taagtaagtatattgaaaaactactatgacaatattaacaaattattttaatgttagagactattttgactaatgaaatacataat-aaggactattttc 24806768  T
Q  142 aaatttcgatagattaagggactatt 167  Q
    ||||||| ||| ||||||||||||||    
T  24806769 aaatttcaatacattaagggactatt 24806794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 169
Target Start/End: Complemental strand, 13834493 - 13834366
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| || ||||||  ||||||||| ||||||||||||||| |  | || ||||||||||  || | ||||||||| ||| |||||     
T  13834493 taagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggactatttta 13834394  T
Q  142 aaatttcgatagattaagggactattat 169  Q
    |||||| |||| ||| ||||||||||||    
T  13834393 aaattttgataaattgagggactattat 13834366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 56095186 - 56095115
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||| |||| || | |||||||    
T  56095186 taagtaagtatattaaaagactaatatgacaatattaacaaattattttaatgttagggactatgttgacta 56095115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 11839934 - 11839800
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||| ||||||| || ||||||  |||||||||  || ||||||||||| | || || |||||||||| ||  | |||||||   ||| |||||     
T  11839934 taagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgtcaaggactattttgactaacgaggtgcacaatctgggactattttg 11839835  T
Q  142 aaatttcgatagattaagggactattattgctact 176  Q
    ||||||||||| ||| |||||||||| | ||||||    
T  11839834 aaatttcgatatattgagggactattgtggctact 11839800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 32934081 - 32934207
Alignment:
Q  43 aagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttca 142  Q
    ||||||||||||| ||||| |||| |  ||||||||| ||||||||||||||| ||   || |||||||||   || | |||||||||  || ||||| |    
T  32934081 aagtaagtatattaaaagactaatgtgacaatattaacaaattattttaatgttagaaactattttgactagcaaagtgcacaatcaaaaactattttaa 32934180  T
Q  143 aatttcgatagattaagggactattat 169  Q
    ||||| |||| ||| ||||||||||||    
T  32934181 aattttgatacattgagggactattat 32934207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 51151006 - 51150919
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatca 129  Q
    |||||||||||||||||  | ||||||  ||||||||| ||| ||||||||||| |||| || |||| |||||  |||| ||||||||    
T  51151006 taagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactattttcactaacaaaatgcacaatca 51150919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 26499403 - 26499473
Alignment:
Q  44 agtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaa 114  Q
    ||||||||||||||| || ||||||  |||||||||| || ||||||||||| | || || ||||||||||    
T  26499403 agtaagtatattgaatgactaatatgacaatattaatgaagtattttaatgttacggactattttgactaa 26499473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 45615724 - 45615852
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaat--acacaatcaacgacaattt 139  Q
    ||||||||||||||||| || ||| ||  ||||||||| ||||||||||||| | || | || ||||||||||  || |  |||||||||| ||| | ||    
T  45615724 taagtaagtatattgaaggactaaaatgacaatattaacaaattattttaatattagagactattttgactaacaaagtgcacacaatcaaggacta-tt 45615822  T
Q  140 tcaaatttcgatagattaagggactattat 169  Q
    | ||||||||| | ||| ||||||||||||    
T  45615823 taaaatttcgaaacattgagggactattat 45615852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 38932761 - 38932854
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattt 139  Q
    ||||||||||||| || ||||||  |||||||||| || ||||||||||| || | || ||||||||||  ||||  |||||| | ||||||||    
T  38932761 taagtatattgaaggactaatatgacaatattaatgaaatattttaatgttagagactattttgactaacaaaatgtacaatcgaagacaattt 38932854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 312705 - 312777
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaa 118  Q
    ||||||||||||| || ||||||  |||||| ||| || ||||| ||||| |||| || ||||||||||||||    
T  312705 taagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaa 312777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 10067661 - 10067786
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| || ||||||  ||||||||| ||| ||||||||||| || | || |||||| |||  |||||||||||||  ||| |||||     
T  10067661 taagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactattttgattaacaaaatacacaatcagagactatttta 10067760  T
Q  142 aaatttcgatagattaagggactatt 167  Q
    ||||||||||| ||| || |||||||    
T  10067761 aaatttcgatacattgagagactatt 10067786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 169
Target Start/End: Original strand, 25085025 - 25085152
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    |||||||||||||||||||| ||||||  ||||||||| ||||||||||||||| |  | || ||||||||||  || | |||||||||  |  |||||     
T  25085025 taagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaaaagtatttta 25085124  T
Q  142 aaatttcgatagattaagggactattat 169  Q
    |||||| |||| ||||||| ||||||||    
T  25085125 aaattttgatacattaaggtactattat 25085152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 9307404 - 9307509
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| || ||||||  |||| ||||| |||||||||||||| |||| | | |||||| |||||||| |||| |||  ||| |||||     
T  9307404 taagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggac-tatttgacaaatgaaatgcacattcagggactatttta 9307502  T
Q  142 aaatttc 148  Q
    |||||||    
T  9307503 aaatttc 9307509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 16431597 - 16431650
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgt 95  Q
    ||||||||||||||||| || ||||||  |||||||| | ||||||||||||||    
T  16431597 taagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgt 16431650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 49880169 - 49880266
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattt 139  Q
    |||||||||||||||||||| ||||||  |||||| ||| || ||||||||||| |||| || |||||||||||||| |  |||||||  ||||||||    
T  49880169 taagtaagtatattgaaagactaatatgacaatatcaatgaagtattttaatgttagggactattttgactaatgaagtgtacaatcagagacaattt 49880266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 30050536 - 30050659
Alignment:
Q  44 agtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttcaa 143  Q
    ||||||||||||||| |  |||||| ||||||||||  |  ||||||||||| || | || ||||||||||  || | || |||||  ||| ||||| ||    
T  30050536 agtaagtatattgaagggttaatatgtcaatattaacgagatattttaatgtgagagactattttgactaacaaattgcataatcatagactattttgaa 30050635  T
Q  144 atttcgatagattaagggactatt 167  Q
    ||||||||| ||||||||||||||    
T  30050636 atttcgatacattaagggactatt 30050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 165
Target Start/End: Original strand, 27463847 - 27463970
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    |||||||||||||||||||| ||||||  ||||||||| ||| |||||||| || |||  || ||||| |||| ||| | ||||| ||  ||| |||||     
T  27463847 taagtaagtatattgaaagactaatataacaatattaacaaagtattttaacgttaggaactattttgtctaacgaagtgcacaaccagagactattttg 27463946  T
Q  142 aaatttcgatagattaagggacta 165  Q
    |||||| |||| ||| || |||||    
T  27463947 aaattttgatacattgagagacta 27463970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 166
Target Start/End: Original strand, 8206233 - 8206357
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| || ||||||  |||||||||| |||||||||  ||| | || || |||||||||||||| | |||| |||  ||| ||| |     
T  8206233 taagtaagtatattgaaggattaatatgacaatattaatgaattattttgttgtcaaggactattttgactaatgaagtgcacattcagggactattata 8206332  T
Q  142 aaatttcgatagattaagggactat 166  Q
    ||||||||||| ||||| |||||||    
T  8206333 aaatttcgatacattaaaggactat 8206357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11497966 - 11498037
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||||| ||||| ||||||  ||||||||| ||||||||||||||| |||| || | |||||||    
T  11497966 taagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgttagggactatgttgacta 11498037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 11534906 - 11534959
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgt 95  Q
    |||||||||||||| ||||| ||||||  ||||||||| |||||||||||||||    
T  11534906 taagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgt 11534959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11505322 - 11505393
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||||| ||||| |||||   ||||||||| ||||||||||||||| |||| || | |||||||    
T  11505322 taagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactatgttgacta 11505393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11512716 - 11512787
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||||| ||||| |||||   ||||||||| ||||||||||||||| |||| || | |||||||    
T  11512716 taagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactatgttgacta 11512787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11520092 - 11520163
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||||| ||||| |||||   ||||||||| ||||||||||||||| |||| || | |||||||    
T  11520092 taagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactatgttgacta 11520163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11527500 - 11527571
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||||| ||||| |||||   ||||||||| ||||||||||||||| |||| || | |||||||    
T  11527500 taagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgttagggactatgttgacta 11527571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 7165730 - 7165642
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaa 130  Q
    |||||||||||||||||||| ||||||   |||||||| ||||||||||||||| | || || ||||||||||| || | |||||||||    
T  7165730 taagtaagtatattgaaagactaatatgaaaatattaacaaattattttaatgttaaggactattttgactaataaagtgcacaatcaa 7165642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 40124430 - 40124305
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| |  ||||||  |||||||||| || || |||||||| | || || |||||||||| | | | ||||||||  ||| |||||     
T  40124430 taagtaagtatattgaagggctaatatgacaatattaatgaagtactttaatgttatggactattttgactaacggagtgcacaatcagagaccatttta 40124331  T
Q  142 aaatttcgatagattaagggactatt 167  Q
    ||||||||||| ||||| ||||||||    
T  40124330 aaatttcgatacattaatggactatt 40124305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 6788386 - 6788301
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaat 127  Q
    ||||||||||||||||| || || |||  ||||||||| ||||||||||||||| |  |  | |||||||||||||||| ||||||    
T  6788386 taagtaagtatattgaatgactagtatgacaatattaacaaattattttaatgtcattgattattttgactaatgaaatgcacaat 6788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 20966132 - 20966183
Alignment:
Q  44 agtaagtatattgaaagagtaatatttcaatattaataaattattttaatgt 95  Q
    |||||||||||| ||||| ||||||  ||||||||| |||||||||||||||    
T  20966132 agtaagtatattaaaagactaatatgacaatattaacaaattattttaatgt 20966183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 17742583 - 17742636
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgt 95  Q
    |||||||||||||| ||||| ||||||  ||||||||| ||||||||| |||||    
T  17742583 taagtaagtatattaaaagactaatatgacaatattaacaaattatttaaatgt 17742636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 41746488 - 41746368
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttcaaat 145  Q
    ||||||||||||| |  ||||||  |||||||||| || ||||||||||| || | || |||||| ||| ||| || |||||||  ||||| ||| ||||    
T  41746488 taagtatattgaagggctaatatgacaatattaatgaagtattttaatgttagagactattttgaataacgaagtatacaatcagagacaa-tttaaaat 41746390  T
Q  146 ttcgatagattaagggactatt 167  Q
    || |||| |||||||| |||||    
T  41746389 tttgatatattaagggtctatt 41746368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 14984572 - 14984447
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    |||| |||||||||||| || ||||||  |||||||||  || ||||||||||| |||  || |||||||||| ||| | ||||||||  ||  |||||     
T  14984572 taagcaagtatattgaaggattaatatgacaatattaacgaaatattttaatgtcaggaactattttgactaacgaagtgcacaatcagggagtattttg 14984473  T
Q  142 aaatttcgatagattaagggactatt 167  Q
    ||||||||||| ||| ||||||||||    
T  14984472 aaatttcgatatattgagggactatt 14984447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 34979116 - 34979226
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    ||||||||||||||||| || ||||||   ||||||||  || ||||||||||| || | || ||||||||||  |||| |||||| ||  || |||||     
T  34979116 taagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactattttgactaacaaaatgcacaattaaaaactatttta 34979215  T
Q  142 aaatttcgata 152  Q
    |||||||||||    
T  34979216 aaatttcgata 34979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 40954492 - 40954542
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaa 92  Q
    |||||||||||||||||| | ||||||  ||||||||| ||||||||||||    
T  40954492 taagtaagtatattgaaacactaatatgacaatattaaaaaattattttaa 40954542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 8062855 - 8062786
Alignment:
Q  44 agtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgacta 113  Q
    |||||||||||| ||||| ||||||  ||||||||| ||||||||||||||| | || || |||||||||    
T  8062855 agtaagtatattaaaagactaatatgacaatattaacaaattattttaatgttatggactattttgacta 8062786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 39608481 - 39608356
Alignment:
Q  42 taagtaagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttc 141  Q
    |||||||||||| |||| || ||||||  |||||||||| || ||||||||||||||   || |||| ||||| ||| | ||| ||||| ||  |||||     
T  39608481 taagtaagtatactgaatgactaatatgacaatattaatcaagtattttaatgtaagtaactattttaactaacgaagtgcacgatcaatgattattttg 39608382  T
Q  142 aaatttcgatagattaagggactatt 167  Q
    ||||||||||| ||| || |||||||    
T  39608381 aaatttcgatacattgagagactatt 39608356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 5198027 - 5198101
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaat 120  Q
    |||||||||||||||| ||||||  |||||||||| || ||||||||||| || |  | |||||||||| |||||    
T  5198027 taagtatattgaaagactaatatgacaatattaatgaagtattttaatgttagagattattttgactaacgaaat 5198101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 178
Target Start/End: Complemental strand, 5362406 - 5362274
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaaatacacaatcaacgacaattttcaaat 145  Q
    ||||||||||||| || ||||||  | |||||||  || ||||||||| | |||| || ||||||||||  || ||||||||||   || ||||| ||||    
T  5362406 taagtatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactattttgactaacaaattacacaatcatgaactattttgaaat 5362307  T
Q  146 ttcgatagattaagggactattattgctactta 178  Q
    ||||||| | |||| |||| || | ||||||||    
T  5362306 ttcgatacactaagagactgttgtggctactta 5362274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 2529 - 2457
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaa 118  Q
    ||||||||||||| || ||||||  |||||| ||| || ||||| ||||| |||| || ||||||||||||||    
T  2529 taagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaa 2457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 35035 - 35107
Alignment:
Q  46 taagtatattgaaagagtaatatttcaatattaataaattattttaatgtaaggggcttttttgactaatgaa 118  Q
    ||||||||||||| || ||||||  |||||| ||| || ||||| ||||| |||| || ||||||||||||||    
T  35035 taagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaa 35107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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