View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5739F-Insertion-17 (Length: 240)

Name: NF5739F-Insertion-17
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5739F-Insertion-17
NF5739F-Insertion-17
[»] chr2 (8 HSPs)
chr2 (11-240)||(11156474-11156703)
chr2 (23-237)||(11149809-11150023)
chr2 (23-239)||(11145838-11146054)
chr2 (23-238)||(11137534-11137749)
chr2 (37-238)||(11178817-11179018)
chr2 (11-127)||(11119106-11119222)
chr2 (140-238)||(11172715-11172813)
chr2 (11-126)||(11111336-11111451)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 11156703 - 11156474
Alignment:
Q  11 gtatctgccccggatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggag 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156703 gtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggag 11156604  T
Q  111 tcgttggatcaaaattggtaaggttcgtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggact 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156603 tcgttggatcgaaattggtaaggttcgtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggact 11156504  T
Q  211 tccagtactgctgaagttgtacaatcgacc 240  Q
    ||||||||||||||||||||||||||||||    
T  11156503 tccagtactgctgaagttgtacaatcgacc 11156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 11150023 - 11149809
Alignment:
Q  23 gatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcaa 122  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  11150023 gatgttgagaacaactcttgatcactttggagcaaaccctttttcacttgaagattagagtaatagttcttgtcaaatttatcaggagtcgttggatcga 11149924  T
Q  123 aattggtaaggttcgtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggacttccagtactgct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |    
T  11149923 aattggtaaggttcgtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggacttcctgtaccgtt 11149824  T
Q  223 gaagttgtacaatcg 237  Q
    |||||||||||||||    
T  11149823 gaagttgtacaatcg 11149809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 11146054 - 11145838
Alignment:
Q  23 gatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcaa 122  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11146054 gatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaatagttcttgtcaaatttatcaggagtagttggatcaa 11145955  T
Q  123 aattggtaaggttcgtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggacttccagtactgct 222  Q
    || | | ||||   || |||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||    
T  11145954 aacttgcaaggggagttccaggtccaccattgggacatatattgcgcaattgttgtaagtaagttgcgttaagagttggatcgggacttcccgtattgct 11145855  T
Q  223 gaagttgtacaatcgac 239  Q
    |||||||||||||||||    
T  11145854 gaagttgtacaatcgac 11145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 11137749 - 11137534
Alignment:
Q  23 gatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcaa 122  Q
    ||||| ||||| | |||||| ||||| || ||||| ||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  11137749 gatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctgaagattggagtagtagttcttgtcaaatttatcaggagtcgttgggtcaa 11137650  T
Q  123 aattggtaaggttcgtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggacttccagtactgct 222  Q
    ||||||  |||||  |    ||||||||||| ||||||||| | || |||| |||||| |||||||| |||||||||||||| ||  |||| ||||||||    
T  11137649 aattggcgaggttatttggtggtccaccattaggacatattttacgtaattcttgtaaataagttgtattaagagttggatcaggttttcctgtactgct 11137550  T
Q  223 gaagttgtacaatcga 238  Q
    ||||||||| ||||||    
T  11137549 gaagttgtataatcga 11137534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 11179018 - 11178817
Alignment:
Q  37 ctcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcaaaattggtaaggttc 136  Q
    |||||| |||||||| | |||||| |||   ||||| ||||||||||| |||||   ||||||| ||||||| |||||||| || |||| ||| ||||||    
T  11179018 ctcttggtcactttgaaacaagccatttccaacttggagattggagtagtagttggagtcaaatgtatcaggtgtcgttgggtccaaatcggttaggttc 11178919  T
Q  137 gtgccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggacttccagtactgctgaagttgtacaatc 236  Q
    || |||||||||||||||||||||||||   |||||  ||| ||||||||||||||||| |||| ||| ||| |||||||  ||||||| ||||| ||||    
T  11178918 gtaccaggtccaccattgggacatattgcttgcaatgtttgcaagtaagttgtgttaagggttgaatcgggatttccagtgttgctgaaattgtataatc 11178819  T
Q  237 ga 238  Q
    ||    
T  11178818 ga 11178817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 11119222 - 11119106
Alignment:
Q  11 gtatctgccccggatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggag 110  Q
    |||||||| || | |||||||||||| ||||| |||||||| ||||| ||||||||  |||||||||||  ||| ||||||||||| |||||||| ||||    
T  11119222 gtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttatcgggag 11119123  T
Q  111 tcgttggatcaaaattg 127  Q
    | |||||||||||||||    
T  11119122 ttgttggatcaaaattg 11119106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 11172813 - 11172715
Alignment:
Q  140 ccaggtccaccattgggacatattgtgcgcaattgttgtaagtaagttgtgttaagagttggatccggacttccagtactgctgaagttgtacaatcga 238  Q
    ||||||||||||||||||||||| || | ||||  ||||||||| |||||||| ||||||||||| ||| |||||||| ||||||| ||||| ||||||    
T  11172813 ccaggtccaccattgggacatatagttctcaatgtttgtaagtaggttgtgttgagagttggatcgggatttccagtattgctgaaattgtataatcga 11172715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 11111451 - 11111336
Alignment:
Q  11 gtatctgccccggatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggag 110  Q
    |||||||| || | ||||||||| || ||||| |||||||| ||||| ||||||||  |||||||||||  |||  |||||||||| ||| |||||||||    
T  11111451 gtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggag 11111352  T
Q  111 tcgttggatcaaaatt 126  Q
    ||||||| || |||||    
T  11111351 tcgttgggtcgaaatt 11111336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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