View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5739F-Insertion-2 (Length: 1020)
Name: NF5739F-Insertion-2
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5739F-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 723; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 105 - 986
Target Start/End: Original strand, 46753217 - 46754085
Alignment:
| Q |
105 |
agagaggcacaattttaatagttattcaagcaaccaaggagttaatcatgattgcaaaatctaaacccaattaagagggaagagctccaaatatgatcta |
204 |
Q |
| |
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| T |
46753217 |
agagaggcacaattttaatagttattcaagcaaccaaggagttaatcatgattgcaaaatctaaacccgattaagagggaagagctccaaatatgatcta |
46753316 |
T |
|
| Q |
205 |
atagatttggagatagccatcaattaaatagaagtataccatattgtttagaagaaccatatcgatctcgtttgaaaggtgggnnnnnnnnatacaaatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46753317 |
atagatttggagatagccatcaattaaatagaagtataccatattgtttagaagaaccatatcgatctcgtttgaaaggtgggttttttt-atacaaatt |
46753415 |
T |
|
| Q |
305 |
tgaaaggtggtggacttgcaccatattgtttttgcttagnnnnnnnnnatgcaaatataaaaaatacctccaatttcactattgcgccgtcagttcaatg |
404 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46753416 |
tgaaaggtggtggacttgcaccatattgtttttgcttagtttttttt-atgcaaatataaaaaatacctccaatttcactattgcgccgtcagttcaatg |
46753514 |
T |
|
| Q |
405 |
cattttcattccacaatatcaataattttgtttgactaataagatactcaaggcacaattagtgaaagaataaagaggtttggtgatggccatggtggga |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46753515 |
cattttcattccacaatatcaataattttgtttgactaataagatactcaaggcacaattagtgaaagaataaagaggtttggtgatggccatggtggga |
46753614 |
T |
|
| Q |
505 |
ctatggcttcaacgtcccttgaagagctttctcaaactttcttttgaattttttcaatgaattaatactttataattatagatacgatctttaaagattg |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46753615 |
ctatggcttcaacgtcccttgaagagctttctcaaactttcttttgaagtttttcaatgaattaatactttataattatagatacgatctttaaagattg |
46753714 |
T |
|
| Q |
605 |
cagaaagaaatgagtaaattttaaatcggttagttatgatactccattagattttgttgttggttg--gtttagattacagaaagtagtatgtaaataat |
702 |
Q |
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| T |
46753715 |
cagaaagaaacgagtaaattttaaatcggttagttatgatactccattagattttgttgttggttgttgtttagattacaggaagtagtatgtaaataat |
46753814 |
T |
|
| Q |
703 |
tctttacatatttgttgttgtttttatctgtcaattacatgtttggcgtgacaggaacactagagtttttcaacaaaagggggactccattaatcatctc |
802 |
Q |
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| T |
46753815 |
tctttacatatttgttgttgtttttatctgtcaattacatgtt------------aacactagagtttttcaacaaaagggggactccattaatcatctc |
46753902 |
T |
|
| Q |
803 |
gtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcaccctagttttgctttttcttaccacatgtggtggtttaacacactctcatatt |
902 |
Q |
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| T |
46753903 |
gtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcatcctagttttgctttttcttaccacatgtggtggcttaacacactctcatatt |
46754002 |
T |
|
| Q |
903 |
tgggagtttttattttagctccggtctcttttattctttttagtctttgcctgcatttgggctgtatcactaagcttttgttct |
986 |
Q |
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| T |
46754003 |
tgggagttttta-tttagctccggtctcttttattctttttagtctttgcctacattttggctatatcactaagtttttgttct |
46754085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 46753118 - 46753154
Alignment:
| Q |
7 |
acctactaggtgaataatttcatacttgaccaatgaa |
43 |
Q |
| |
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| T |
46753118 |
acctactaggtgaataatttcatgcttgaccaatgaa |
46753154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 762 - 986
Target Start/End: Original strand, 1680587 - 1680810
Alignment:
| Q |
762 |
ctagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatcaccctagttttgc |
861 |
Q |
| |
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||||||||||||||||||| ||| |||||||||| || ||| ||||||||||||| | |||| |||||||| |||||| ||||||| | |||||||| |
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| T |
1680587 |
ctagagtttttcaacaaaaagggtactccattaaacaactcatagaaaaggttaaactccaatccttctagtgattgaagacaaatcatcatagttttga |
1680686 |
T |
|
| Q |
862 |
tttttcttaccacatgtggtggtttaacacactctcatatttgggagtttttattttagctccggtctcttttattctttttagtctttgcctgcatttg |
961 |
Q |
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||| ||||||||| ||||||||||| ||||||||| ||| |||||||||| ||||| | || | ||||||||||| |||||| ||||| || ||| |
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| T |
1680687 |
tttcacttaccacacctggtggtttaagccactctcatgtttaggagttttta-tttagtttcgatttcttttattctctttagtgtttgcatgattttt |
1680785 |
T |
|
| Q |
962 |
ggctgtatcactaagcttttgttct |
986 |
Q |
| |
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|||| ||||| |||| ||||||||| |
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| T |
1680786 |
ggctatatcattaagtttttgttct |
1680810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 888
Target Start/End: Complemental strand, 26159739 - 26159664
Alignment:
| Q |
813 |
ttaagtttcaattcttctagtagttgaaggcaaatcaccctagttttgctttttcttaccacatgtggtggtttaa |
888 |
Q |
| |
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||||| |||||| |||||||| | ||||| ||||||| |||| |||||||||| ||| |||||||||||| |||| |
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| T |
26159739 |
ttaagcttcaatccttctagtggctgaagacaaatcatcctaattttgcttttagttatcacatgtggtggcttaa |
26159664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 744 - 888
Target Start/End: Original strand, 12250863 - 12251007
Alignment:
| Q |
744 |
tttggcgtgacaggaacactagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggc |
843 |
Q |
| |
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|||||||||||| ||| |||||||||||||||||||| || | || || | ||| || |||| || |||||| | |||| |||||||| |||||| || |
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| T |
12250863 |
tttggcgtgacaagaatgctagagtttttcaacaaaagaggaattcaatcattcaacttttagataaagttaagctccaatccttctagtggttgaaagc |
12250962 |
T |
|
| Q |
844 |
aaatcaccctagttttgctttttcttaccacatgtggtggtttaa |
888 |
Q |
| |
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|||||| | || |||||||||| ||| |||||||||||| |||| |
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| T |
12250963 |
aaatcatcataattttgcttttaattatcacatgtggtggcttaa |
12251007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 750 - 888
Target Start/End: Original strand, 26698043 - 26698181
Alignment:
| Q |
750 |
gtgacaggaacactagagtttttcaacaaaagggggactccattaatcatctcgtagaaaaggttaagtttcaattcttctagtagttgaaggcaaatca |
849 |
Q |
| |
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|||||||||| ||||||||||||||||||||| | || || | || ||| |||| || ||||| |||||| ||||| || ||||||| ||||||| |
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| T |
26698043 |
gtgacaggaatgctagagtttttcaacaaaaggaaaattcaatcatccaactcatagataaaattaagcttcaatccttctggtggttgaagccaaatca |
26698142 |
T |
|
| Q |
850 |
ccctagttttgctttttcttaccacatgtggtggtttaa |
888 |
Q |
| |
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|||| |||||||||| ||| |||||||||||| |||| |
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| T |
26698143 |
tcctaattttgcttttaattatcacatgtggtggcttaa |
26698181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 821 - 888
Target Start/End: Original strand, 55416932 - 55416999
Alignment:
| Q |
821 |
caattcttctagtagttgaaggcaaatcaccctagttttgctttttcttaccacatgtggtggtttaa |
888 |
Q |
| |
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|||||||||| || ||||||||||||||| |||| |||||||||| |||||||| |||||| |||| |
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| T |
55416932 |
caattcttctggtggttgaaggcaaatcatcctaattttgcttttaattaccacacatggtggcttaa |
55416999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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