View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5739F-Insertion-3 (Length: 975)

Name: NF5739F-Insertion-3
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5739F-Insertion-3
NF5739F-Insertion-3
[»] chr8 (9 HSPs)
chr8 (15-975)||(5478335-5479291)
chr8 (308-494)||(17602720-17602900)
chr8 (308-437)||(17607467-17607590)
chr8 (410-501)||(9784723-9784814)
chr8 (883-975)||(41684918-41685011)
chr8 (410-479)||(9786741-9786810)
chr8 (308-350)||(9784870-9784912)
chr8 (414-503)||(19152190-19152279)
chr8 (308-350)||(9786866-9786908)
[»] scaffold0256 (1 HSPs)
scaffold0256 (310-498)||(15114-15300)
[»] chr4 (4 HSPs)
chr4 (339-501)||(8569176-8569335)
chr4 (360-503)||(46449865-46450005)
chr4 (335-501)||(5892403-5892566)
chr4 (308-347)||(36396188-36396227)
[»] scaffold0012 (1 HSPs)
scaffold0012 (308-501)||(165488-165676)
[»] chr5 (4 HSPs)
chr5 (372-502)||(39897155-39897282)
chr5 (329-435)||(25725684-25725787)
chr5 (307-350)||(39897283-39897326)
chr5 (308-350)||(40575569-40575611)
[»] chr2 (2 HSPs)
chr2 (410-502)||(21712802-21712894)
chr2 (309-350)||(21712705-21712746)
[»] chr1 (13 HSPs)
chr1 (410-501)||(49116381-49116472)
chr1 (410-501)||(49120974-49121065)
chr1 (410-501)||(26623053-26623144)
chr1 (410-501)||(26627648-26627739)
chr1 (408-501)||(27958382-27958476)
chr1 (307-350)||(26627795-26627838)
chr1 (308-350)||(26623200-26623242)
chr1 (308-350)||(49116283-49116325)
chr1 (308-350)||(49120876-49120918)
chr1 (459-502)||(35235594-35235637)
chr1 (307-341)||(6976518-6976552)
chr1 (308-341)||(6976687-6976720)
chr1 (308-353)||(9834537-9834582)
[»] chr7 (7 HSPs)
chr7 (410-501)||(35933898-35933989)
chr7 (410-501)||(35938499-35938590)
chr7 (413-501)||(25453806-25453894)
chr7 (306-350)||(25470861-25470905)
chr7 (308-350)||(25453977-25454019)
chr7 (308-350)||(35934045-35934087)
chr7 (308-350)||(35938646-35938688)
[»] chr3 (2 HSPs)
chr3 (308-390)||(10863136-10863218)
chr3 (308-350)||(22419351-22419393)
[»] chr6 (1 HSPs)
chr6 (308-350)||(26890418-26890460)


Alignment Details
Target: chr8 (Bit Score: 814; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 814; E-Value: 0
Query Start/End: Original strand, 15 - 975
Target Start/End: Complemental strand, 5479291 - 5478335
Alignment:
Q  15 tgctttaggaatccatggtggatcagtcatccggacgcgagaacagtggtaaacacaaacaaaagaaagttgaatgagtgtagggatttcgcacaatgcg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5479291 tgctttaggaatccatggtggatcagtcatccggacgcgagaacaatagtaaacacaaacaaaagaaagttgaatgagtgtagggatttcgcacaatgcg 5479192  T
Q  115 atagggttgtgccagctttgatagtatctcataccagcattcattggagacggtggaagaagcttttacatatagtttactcgtcaaagcttcgaaaaga 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5479191 atagggttgtgccagctttgatagtatctcataccagcattcgttggagaaggtggaagaagcttttacatatagtttactcgtcaaagcttcgaaaaga 5479092  T
Q  215 taactttttactactgcaacgnnnnnnnnnnn--atcaattttaaagttttaaaatattctttaacttgtttttcatagaactgcaatgaaatgctgtga 312  Q
    |||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5479091 taactttttactactgcaacgtttttttttttttatcaattttaaagttttaaaatattctttaacttgtttttcatagaactgccatgaaatgctgtga 5478992  T
Q  313 ataagga----gttgatttgttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatgt 408  Q
    ||||| |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478991 ataagtaagtagttgatttgttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatgt 5478892  T
Q  409 aattatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaaatgcat 508  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478891 aattatttagtgtaattatatgtatagccctgtaac-tctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaaatgcat 5478793  T
Q  509 gttatgacgcattggaaacggggcacccttcacccacagtgacaaacggcagagttaagggactactataagcaagaactttgcttagttacttgcacta 608  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5478792 gttatgacgcattggaaacggggcacccttcatccacagtgacaaacggcagagttaagggattactataagcaagaactttgcttagttacttgcacta 5478693  T
Q  609 ttggggattccggaaaaatatgtggtgactttatgattcgtgtgcctctctattcttctaacacattactttgcttccattatttctagaccacctcttt 708  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478692 ttgggtattccggaaaaatatgtggtgactttatgattcgtgtgcctctctattcttctaacacattactttgcttccattatttctagaccacctcttt 5478593  T
Q  709 gcttccattatttccttccttcaagaatcaagatgtgcattatactcctcttagcaagaaaaggtaacgagcaattactaaacagaataaggtatagtgt 808  Q
    ||||||||||         |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478592 gcttccatta---------ttccggaatcaagatgtgcattatactcctcttagcaagaaaaggtaacgagcaattactaaacagaataaggtatagtgt 5478502  T
Q  809 ctaacaaaacccaactagattatagaataaattattattccagactcattgatagcctgttttcaagcagatacctaaatttgactagtgttgcatcagt 908  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478501 ctaacaaaacccaactagattatagaataaattattattccagactcattgatagcctgttttcaagcagatacctaaatttgactagtgttgcatcagt 5478402  T
Q  909 tgaaacaacttcaaaattatagattaaaaactaaaacatggtcatcaaagcaaataaaccatatgag 975  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5478401 tgaaacaacttcaaaattatagattaaaaactaaaacatggtcatcaaagcaaataaaccatatgag 5478335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 308 - 494
Target Start/End: Complemental strand, 17602900 - 17602720
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatg 407  Q
    |||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |||||| ||||    |    
T  17602900 tgtgaataaggagttgatttgttct---tattatatttattagtttgttcctagaaataaggacctaaatcagaaattgatttgtttccaatataa---g 17602807  T
Q  408 taattatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatt 494  Q
    |||||||||||||||||||||||||||||| ||||||||||  ||||||| || |||||||||||||||||||||||||||| ||||    
T  17602806 taattatttagtgtaattatatggatagccttgtaacctctttatatacataaagaataacaatgagaaaggcatcaagccaatatt 17602720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 308 - 437
Target Start/End: Complemental strand, 17607590 - 17607467
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatg 407  Q
    |||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||   ||||    
T  17607590 tgtgaataaggagttgatttgttct---tattatatttattagtttgttcctagaaataaggacataaatcagaaattgatttgtttccaata---tatg 17607497  T
Q  408 taattatttagtgtaattatatggatagcc 437  Q
    ||||||||||||||||||||||| ||||||    
T  17607496 taattatttagtgtaattatatgaatagcc 17607467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 9784814 - 9784723
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||| ||||||  |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  9784814 attatttagtgtaattatatgtatagcctcgtaacctctatatatacataaggaataacaaggagaaaggcatcaagccattatttgtgaca 9784723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 883 - 975
Target Start/End: Original strand, 41684918 - 41685011
Alignment:
Q  883 ctaaatttgactagtgttgcatcagttgaaacaacttcaaaattatagattaaaaactaaaacatggtcatcaaagcaaat-aaaccatatgag 975  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||||| || |||||||||  ||| |||||||||||||| ||||||||||||    
T  41684918 ctaaattcgactaatgttgcatcacttgaaacaacttcaaaattatagtttcaaaactaaagtatgatcatcaaagcaaataaaaccatatgag 41685011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 410 - 479
Target Start/End: Complemental strand, 9786810 - 9786741
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaagg 479  Q
    ||||||||||||||||||||| |||||| ||||| ||||| ||||||| |||||||||||| ||||||||    
T  9786810 attatttagtgtaattatatgtatagccttgtaatctctatatatacataaggaataacaaggagaaagg 9786741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 9784912 - 9784870
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  9784912 tgtgaataaggagttgacttgttctccttattatatttattag 9784870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 414 - 503
Target Start/End: Complemental strand, 19152279 - 19152190
Alignment:
Q  414 tttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaaa 503  Q
    |||| ||||||||  || |||||| |||||||| || |||||||||||||||||||| ||||||  ||||||  | ||||||||||||||    
T  19152279 tttactgtaattacttgtatagccttgtaacctttatatatacacaaggaataacaacgagaaaaacatcaaatcgttatttgtgacaaa 19152190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 9786908 - 9786866
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  9786908 tgtgaataacgagttgacttgttctccttattatatttattag 9786866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 140; Significance: 8e-73; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 310 - 498
Target Start/End: Complemental strand, 15300 - 15114
Alignment:
Q  310 tgaataaggagttgatttgttctccttattatatttattagtttattcctagaaataagg-acataaattagaaattgatttatttccattatactatgt 408  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||   |||    
T  15300 tgaataaggagttgatttgttctccttattatatttattagcttattcctagaaataagggacataaattagaaattgatttgtttccattata---tgt 15204  T
Q  409 aattatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtg 498  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  15203 aattatttagtgtaattatatgtatagccttgtaacctctatatatacacaaggaataacaatgagaaaggtatcaagccattatctgtg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 1e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 339 - 501
Target Start/End: Complemental strand, 8569335 - 8569176
Alignment:
Q  339 tatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatgtaattatttagtgtaattatatggatagccc 438  Q
    ||||||| ||||||| ||||||||||||||||||||||| | |||||||||| |||||||||||   ||||||||| ||||||||||||||| ||||||     
T  8569335 tatatttgttagtttgttcctagaaataaggacataaatcaaaaattgatttgtttccattata---tgtaattatgtagtgtaattatatgtatagcct 8569239  T
Q  439 tgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8569238 tgtaacctctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 8569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 360 - 503
Target Start/End: Complemental strand, 46450005 - 46449865
Alignment:
Q  360 agaaataaggacataaattagaaattgatttatttccattatactatgtaattatttagtgtaattatatggatagccctgtaacctctacatatacaca 459  Q
    |||||||||||||||||  |||||||||||| |||||||||||   |||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  46450005 agaaataaggacataaaccagaaattgatttgtttccattata---tgtaattatttagtgtaattatatggatagccttgtaacctctatatatacaca 46449909  T
Q  460 aggaataacaatgagaaaggcatcaagccattatttgtgacaaa 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46449908 aggaataacaatgagaaaggcatcaagccattatttgtgacaaa 46449865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 335 - 501
Target Start/End: Original strand, 5892403 - 5892566
Alignment:
Q  335 ttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatgtaattatttagtgtaattatatggata 434  Q
    ||||||||||||||||||| || ||||||||||||||| |||| |||||||||||| ||  | ||| | ||  |||||| ||| |||||| |  || |||    
T  5892403 ttattatatttattagtttgtttctagaaataaggacacaaatcagaaattgatttgttctcgtta-atta--taattacttactgtaatcacctgtata 5892499  T
Q  435 gccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||| | |||  |||| ||||||||||| ||||||||||| ||||| ||||||||| |||| ||||||    
T  5892500 gccttataaaatctatatatacacaagaaataacaatgaaaaaggtatcaagccaatattcgtgaca 5892566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 347
Target Start/End: Complemental strand, 36396227 - 36396188
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttat 347  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  36396227 tgtgaataaggagttgacttgttctccttattatatttat 36396188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 108; Significance: 1e-53; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 308 - 501
Target Start/End: Original strand, 165488 - 165676
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatg 407  Q
    |||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||| ||||    
T  165488 tgtgaataaggagttgatttgttct---tattatatttattagtttgttcctagaaataaggacataaatcagaaattgatttgtttccaatata-tatg 165583  T
Q  408 taattatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    |||||||||||||||||||| || |||||| |||| |||||  ||||||| || ||||||||||||||||||||||||| || |||| ||||||    
T  165584 taattatttagtgtaattat-tgtatagccttgtatcctctttatatacagaaagaataacaatgagaaaggcatcaagtcaatattcgtgaca 165676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 9e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 372 - 502
Target Start/End: Complemental strand, 39897282 - 39897155
Alignment:
Q  372 ataaattagaaattgatttatttccattatactatgtaattatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaat 471  Q
    |||||| |||||||||||| ||||||  ||| | ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  39897282 ataaatcagaaattgatttgtttcca--ataat-tgtaattatttagtgtaattatatgtatagccttgtaacctctatatatacacaaggaataacaat 39897186  T
Q  472 gagaaaggcatcaagccattatttgtgacaa 502  Q
    |||||||||||||||||||||||||||||||    
T  39897185 gagaaaggcatcaagccattatttgtgacaa 39897155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 329 - 435
Target Start/End: Complemental strand, 25725787 - 25725684
Alignment:
Q  329 ttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgatttatttccattatactatgtaattatttagtgtaattata 428  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||||||   |||||||||||||||||||||||||    
T  25725787 ttctccttattatatttattagtttgttcctagaaataaagacataaatcagaaattgatttgtttccatta---tatgtaattatttagtgtaattata 25725691  T
Q  429 tggatag 435  Q
    || ||||    
T  25725690 tgtatag 25725684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 39897326 - 39897283
Alignment:
Q  307 ctgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  39897326 ctgtgaataaggagttgacttgttctccttattatatttattag 39897283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 40575569 - 40575611
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  40575569 tgtgaataaggagttgacttgttctccttattatatttattag 40575611  T

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Target: chr2 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 410 - 502
Target Start/End: Original strand, 21712802 - 21712894
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaa 502  Q
    ||||||||||||||||||||| |||| | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21712802 attatttagtgtaattatatgtataggcttgtaacccctatatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgacaa 21712894  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 21712705 - 21712746
Alignment:
Q  309 gtgaataaggagttgatttgttctccttattatatttattag 350  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  21712705 gtgaataaggagttgacttgttctccttattatatttattag 21712746  T

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Target: chr1 (Bit Score: 68; Significance: 7e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 49116381 - 49116472
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  49116381 attatttagtgtaattatatatatagccttgtaacctctatatatacacaagaaataacaaggagaaaggcatcaagccattatttgtgaca 49116472  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 410 - 501
Target Start/End: Original strand, 49120974 - 49121065
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  49120974 attatttagtgtaattatatatatagccttgtaacctctatatatacacaagaaataacaaggagaaaggcatcaagccattatttgtgaca 49121065  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 26623144 - 26623053
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  26623144 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 26623053  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 26627739 - 26627648
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  26627739 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 26627648  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 408 - 501
Target Start/End: Original strand, 27958382 - 27958476
Alignment:
Q  408 taattatttagtgtaatta-tatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatc-aagccattatttgtgaca 501  Q
    |||||||||| |||||||| | || |||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||    
T  27958382 taattatttactgtaattactttgtatagccttgtaac-tctatatatacacaaggaataacaatgagaaaggcatcaaagccaatatttctgaca 27958476  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 26627838 - 26627795
Alignment:
Q  307 ctgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  26627838 ctgtgaataaggagttgacttgttctccttattatatttattag 26627795  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 26623242 - 26623200
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  26623242 tgtgaataaggagttgacttgttctccttattatatttattag 26623200  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 49116283 - 49116325
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  49116283 tgtgaataaggagttgacttgttctccttattatatttattag 49116325  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 49120876 - 49120918
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  49120876 tgtgaataaggagttgacttgttctccttattatatttattag 49120918  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 502
Target Start/End: Complemental strand, 35235637 - 35235594
Alignment:
Q  459 aaggaataacaatgagaaaggcatcaagccattatttgtgacaa 502  Q
    |||||||||||||||||||| ||||||  |||||||||||||||    
T  35235637 aaggaataacaatgagaaagacatcaaagcattatttgtgacaa 35235594  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 307 - 341
Target Start/End: Original strand, 6976518 - 6976552
Alignment:
Q  307 ctgtgaataaggagttgatttgttctccttattat 341  Q
    |||||||||||||||||| ||||||||||||||||    
T  6976518 ctgtgaataaggagttgacttgttctccttattat 6976552  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 6976687 - 6976720
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattat 341  Q
    ||||||||||||||||| ||||||||||||||||    
T  6976687 tgtgaataaggagttgacttgttctccttattat 6976720  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Original strand, 9834537 - 9834582
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattagttt 353  Q
    |||||||||| |||||||||| |||| | |||||||||||||||||    
T  9834537 tgtgaataagtagttgatttgctctcttcattatatttattagttt 9834582  T

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Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 35933989 - 35933898
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  35933989 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 35933898  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 410 - 501
Target Start/End: Complemental strand, 35938590 - 35938499
Alignment:
Q  410 attatttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||||||  |||||| ||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  35938590 attatttagtgtaattatatatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcatcaagccattatttgtgaca 35938499  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 413 - 501
Target Start/End: Complemental strand, 25453894 - 25453806
Alignment:
Q  413 atttagtgtaattatatggatagccctgtaacctctacatatacacaaggaataacaatgagaaaggcatcaagccattatttgtgaca 501  Q
    ||||||||||||||||   |||||| ||||||||||| ||||||| ||| |||||||| ||||||||||| ||||||||||||||||||    
T  25453894 atttagtgtaattatagatatagccttgtaacctctatatatacataagaaataacaaggagaaaggcattaagccattatttgtgaca 25453806  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 25470905 - 25470861
Alignment:
Q  306 gctgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  25470905 gctgtgaataaggagttgacttgttctccttattatatttattag 25470861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 25454019 - 25453977
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  25454019 tgtgaataaggagttgacttgttctccttattatatttattag 25453977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 35934087 - 35934045
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  35934087 tgtgaataaggagttgacttgttctccttattatatttattag 35934045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 35938688 - 35938646
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  35938688 tgtgaataaggagttgacttgttctccttattatatttattag 35938646  T

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Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 10863136 - 10863218
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattagtttattcctagaaataaggacataaattagaaattgattt 390  Q
    |||||||||| |||||||||| |||| || |||||||||||||||| ||| |||||||||||||| |||| | ||||||||||    
T  10863136 tgtgaataagaagttgatttgctctcttttttatatttattagtttgttcttagaaataaggacacaaatcataaattgattt 10863218  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 22419393 - 22419351
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  22419393 tgtgaataaggagttgacttgttctccttattatatttattag 22419351  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 26890418 - 26890460
Alignment:
Q  308 tgtgaataaggagttgatttgttctccttattatatttattag 350  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  26890418 tgtgaataaggagttgacttgttctccttattatatttattag 26890460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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