View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5739F-Insertion-5 (Length: 805)
Name: NF5739F-Insertion-5
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5739F-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 508
Target Start/End: Original strand, 47735631 - 47736133
Alignment:
| Q |
7 |
aatctattcttaacagaaacaggtttaagtcatgggagtgacatgaaaataggtgacaaatgctgctagagaggagacagaacattgaaccacctaagaa |
106 |
Q |
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| T |
47735631 |
aatctattcttaacagaaacaggtttaagtcatgggagtgacatgaaaataggtgacaaatgctgctagagaggagacagaacattgaaccacctaagaa |
47735730 |
T |
|
| Q |
107 |
gacaaagaatggccaccttgctataacaaattccaaggattcaacttccattgtcaatggtaattgatggtttaaatcaaagagtaacgccgttccctgc |
206 |
Q |
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| T |
47735731 |
gacaaagaatggccaccttgctataacaaattccaaggattcaacttccattgtcaatggtaattgatggtttaaatcaaagagtaacgccgttccctgc |
47735830 |
T |
|
| Q |
207 |
aaattcttacattgtcagtactaaaaatgaaatccgttcataatttcgttgctaagtgttacatatatca-ttttttcggtccataatttccgttggtaa |
305 |
Q |
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| T |
47735831 |
aaattcttacattgtcagtactaaaaatgaaatccgttcataatttcgttgctaagtgttacatatatcatttttttcggtccataatttccgttggtaa |
47735930 |
T |
|
| Q |
306 |
cttaatttatttannnnnnnagtagaatgagccgacttaccaagactttgatgctatcagaaacannnnnnncaccacctgaagagatagacctatgtac |
405 |
Q |
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| T |
47735931 |
ctcaatttatttatttttttagtagaatgagccgacttaccaagactttgatgctatcagaaacatttttttcaccacctgaagagatagacctatgtac |
47736030 |
T |
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| Q |
406 |
aaaaagataatatgcaaaattagttgagaattgtggtaagagacactatgctattagctagacggttcacctaataaaaaacttcatccaaattgaataa |
505 |
Q |
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| T |
47736031 |
aaaaagataatatgcaaaattagttgagaattgtggtaagagacactatgctattagctagacggttcacctaataaaaatcttcattcaaattgaataa |
47736130 |
T |
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| Q |
506 |
tat |
508 |
Q |
| |
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| T |
47736131 |
tat |
47736133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 589 - 805
Target Start/End: Complemental strand, 47748129 - 47747911
Alignment:
| Q |
589 |
aaaatgtaaaaagtgaatttacgggcaaccaaaaattagttatta--gttttagtaattcctagttttccataaaaatatatatacatttaactattgtt |
686 |
Q |
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| T |
47748129 |
aaaatgtaaaaagtgattttacgggcaaccaaaaattagttattattgttttagtaattcctagttttccataaaaatatatatacatttaactattgtt |
47748030 |
T |
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| Q |
687 |
tactgtattaggacaatttagaggtaataataattccaaccaagaatagatctagaatcaacgtgtagagtaaacaaatagtcgatccaaagaacaagat |
786 |
Q |
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| T |
47748029 |
tactgtattaggacaatttagaggtaataataatttcaactaagaatagatctaaaatcaacgtgtagagtaaacaaatagtcgatccaaagaacaagat |
47747930 |
T |
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| Q |
787 |
aaatagtgtagaggaacaa |
805 |
Q |
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| T |
47747929 |
aaatagtgtagaggaacaa |
47747911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 539 - 568
Target Start/End: Complemental strand, 47748179 - 47748150
Alignment:
| Q |
539 |
atttccatatattgaaatataatttgcacc |
568 |
Q |
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| T |
47748179 |
atttccatatattgaaatataatttgcacc |
47748150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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