View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5739F-Insertion-6 (Length: 779)

Name: NF5739F-Insertion-6
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5739F-Insertion-6
NF5739F-Insertion-6
[»] chr1 (1 HSPs)
chr1 (8-776)||(38944516-38945279)


Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 8 - 776
Target Start/End: Original strand, 38944516 - 38945279
Alignment:
Q  8 tttctaatgattgatataaggtttccatcaaccccaactttccatattttacttgcttttacatcagtaacatatgcattgccttctgcatcaacggcaa 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38944516 tttctaatgattgatataaggtttccaccaaccccaactttccatattttacttgcttttacatcagtaacatatgcattgccttctgcatcaactgcaa 38944615  T
Q  108 catcgtctgctaaggctttctcatcacctgcattgaatggggaaccaatattaaataattgagtcaaaaattggatagagttgttgcaactttcaattca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||    
T  38944616 catcgtctgctaaggctttctcatcacctgcattgaatggggaaccaatattaaataattgagtcaaaaattggatagagttgttacaactttcaa--ca 38944713  T
Q  208 ctagctagcacatttcaatatagtggcaaatttaataatcccaacaatatcaccataaattagtaattaatatctttgagcttccaaagttcaaccaata 307  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38944714 ctagctagcacatttcaatatagcggcaaatttaataatcccaacaatatcaccataaattagtaattaatatctttgaacttccaaagttcaaccaata 38944813  T
Q  308 ttaggtactacctccggtcctatagtataaagtttggtcaaca-aagaagtagatatcaacttctattggctcaactttttcgtaaataaaatctagtta 406  Q
       ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38944814 ---ggtactacctccaatcctatagtataaagtttggtcaacagaagaagtagatatcaacttctattgactcaactttttcgtaaataaaatctagtta 38944910  T
Q  407 aggattgttttggtcagaattcaactcaactttttcaaaccatattttttacctgttccaattgttttcacattttaccatacaattgactaattgtctt 506  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  38944911 aggattgtcttagtcagaattcaactcaactttttcaaaccatatttttttaatgttccaattgttttcacattttaccataaaatttactaattgtctt 38945010  T
Q  507 ttccactaaaatggtgcttgaaacgaaaaagttaccgagtatcaagatgtgaaaactgagcaattaaggttgattgtcaaaatttggtgagcaactcgac 606  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38945011 ttccactacaatggtgcttgaaacgaaaaagttaccgagtatcaagatgtgaaaactgagcaattaaggttgattgtcaaaatttggtgagcaactcgac 38945110  T
Q  607 atctagatatgaggtataacgtgtctacctacatagttatcatgaatcaaaacgaaaaataatccatcgataaaaacaaagagaacaataagcgtgcagg 706  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38945111 atctagatatgaggtataacgtgtctacctacagagttatcatgaatcaaaacgaaaaataatccatcgataaaaacaaagagaacaataaacgtgcagg 38945210  T
Q  707 tcatgcatggttggaataattatattgaaatattaaaaattgtgaataaaggacacacaacaaacatcta 776  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38945211 tcatgcatggttggaataattatattgaaatattaaaaattgtgaat-aaggacacacaacaaacatcta 38945279  T

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