View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5739F-Insertion-9 (Length: 570)

Name: NF5739F-Insertion-9
Description: NF5739F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5739F-Insertion-9
NF5739F-Insertion-9
[»] chr7 (27 HSPs)
chr7 (7-307)||(24915791-24916089)
chr7 (314-383)||(8329878-8329947)
chr7 (326-383)||(4574968-4575025)
chr7 (314-383)||(26565382-26565451)
chr7 (273-317)||(26565525-26565569)
chr7 (314-375)||(8343644-8343705)
chr7 (314-383)||(8346365-8346434)
chr7 (314-383)||(39182382-39182451)
chr7 (221-322)||(21157656-21157756)
chr7 (314-382)||(21846282-21846350)
chr7 (314-383)||(17811574-17811643)
chr7 (318-383)||(22687101-22687166)
chr7 (235-317)||(30294323-30294405)
chr7 (314-382)||(8329814-8329882)
chr7 (326-382)||(24725307-24725363)
chr7 (320-383)||(14055489-14055552)
chr7 (320-383)||(14365517-14365580)
chr7 (314-383)||(4247582-4247651)
chr7 (314-383)||(7730193-7730262)
chr7 (326-383)||(21157527-21157584)
chr7 (314-383)||(44944679-44944748)
chr7 (329-381)||(23618265-23618317)
chr7 (320-382)||(20570720-20570782)
chr7 (314-383)||(1977775-1977843)
chr7 (326-383)||(5715523-5715580)
chr7 (315-375)||(8346308-8346368)
chr7 (314-358)||(27509271-27509315)
[»] chr4 (29 HSPs)
chr4 (190-317)||(18459594-18459721)
chr4 (314-383)||(37240464-37240534)
chr4 (314-382)||(7044989-7045057)
chr4 (273-317)||(7803203-7803247)
chr4 (273-317)||(7825157-7825201)
chr4 (325-383)||(10143137-10143195)
chr4 (219-317)||(8011114-8011211)
chr4 (273-317)||(7815754-7815798)
chr4 (314-383)||(8010970-8011039)
chr4 (314-383)||(10394836-10394905)
chr4 (273-317)||(7044870-7044914)
chr4 (273-317)||(9149701-9149745)
chr4 (185-317)||(10394621-10394754)
chr4 (274-317)||(46664265-46664308)
chr4 (221-317)||(4156909-4157004)
chr4 (197-263)||(6347015-6347081)
chr4 (325-383)||(55476225-55476283)
chr4 (330-383)||(4157269-4157322)
chr4 (330-383)||(4157556-4157609)
chr4 (314-383)||(5361799-5361868)
chr4 (314-383)||(6346789-6346858)
chr4 (314-383)||(7452732-7452800)
chr4 (314-383)||(9149556-9149625)
chr4 (326-383)||(23064795-23064852)
chr4 (273-316)||(7452617-7452660)
chr4 (314-381)||(24719801-24719868)
chr4 (273-307)||(22060719-22060753)
chr4 (314-383)||(5943093-5943162)
chr4 (326-383)||(9770350-9770407)
[»] chr3 (24 HSPs)
chr3 (314-383)||(13286170-13286239)
chr3 (314-384)||(22137503-22137573)
chr3 (314-383)||(6136403-6136472)
chr3 (325-383)||(3449144-3449202)
chr3 (314-382)||(27676662-27676730)
chr3 (314-383)||(17064533-17064602)
chr3 (271-317)||(15806412-15806458)
chr3 (314-384)||(21963657-21963727)
chr3 (314-384)||(21986093-21986163)
chr3 (314-383)||(24620031-24620100)
chr3 (314-383)||(25870156-25870225)
chr3 (326-383)||(28746014-28746071)
chr3 (314-383)||(42697074-42697143)
chr3 (314-382)||(10872550-10872618)
chr3 (197-317)||(10872842-10872963)
chr3 (328-383)||(22355900-22355955)
chr3 (326-383)||(8592233-8592290)
chr3 (314-383)||(28135988-28136057)
chr3 (228-305)||(24649597-24649674)
chr3 (273-317)||(27676544-27676587)
chr3 (328-383)||(17796805-17796860)
chr3 (328-383)||(19105245-19105300)
chr3 (326-383)||(20766735-20766792)
chr3 (335-383)||(41671426-41671474)
[»] scaffold0042 (1 HSPs)
scaffold0042 (314-383)||(93539-93608)
[»] chr2 (22 HSPs)
chr2 (221-317)||(25539123-25539219)
chr2 (314-383)||(25538979-25539048)
chr2 (314-382)||(16767011-16767079)
chr2 (273-317)||(27406898-27406942)
chr2 (221-317)||(19491987-19492083)
chr2 (326-383)||(19245827-19245884)
chr2 (314-383)||(19262150-19262219)
chr2 (326-383)||(20063961-20064018)
chr2 (314-382)||(8428448-8428516)
chr2 (273-312)||(13502947-13502986)
chr2 (326-383)||(974576-974633)
chr2 (314-383)||(27407017-27407086)
chr2 (314-383)||(29661095-29661164)
chr2 (326-382)||(1405021-1405077)
chr2 (273-317)||(16766894-16766937)
chr2 (326-382)||(21869156-21869212)
chr2 (326-382)||(30433053-30433109)
chr2 (273-320)||(15627851-15627898)
chr2 (329-383)||(27523930-27523984)
chr2 (314-383)||(35565788-35565860)
chr2 (314-383)||(13502507-13502576)
chr2 (314-383)||(31237810-31237879)
[»] chr5 (14 HSPs)
chr5 (318-383)||(24648239-24648304)
chr5 (273-317)||(13349512-13349556)
chr5 (273-317)||(24648124-24648168)
chr5 (314-382)||(43235094-43235162)
chr5 (326-379)||(18051371-18051424)
chr5 (314-383)||(43005693-43005762)
chr5 (338-383)||(17624851-17624896)
chr5 (326-380)||(23172265-23172319)
chr5 (221-263)||(26021411-26021453)
chr5 (275-317)||(30804032-30804074)
chr5 (326-383)||(41427657-41427714)
chr5 (314-382)||(19579169-19579237)
chr5 (273-317)||(30799499-30799543)
chr5 (314-382)||(41688501-41688569)
[»] scaffold0048 (6 HSPs)
scaffold0048 (189-312)||(48680-48803)
scaffold0048 (314-383)||(61148-61217)
scaffold0048 (185-263)||(61323-61401)
scaffold0048 (314-382)||(48497-48565)
scaffold0048 (278-309)||(61268-61299)
scaffold0048 (278-310)||(48616-48648)
[»] chr1 (18 HSPs)
chr1 (314-383)||(17055753-17055822)
chr1 (314-383)||(13100416-13100485)
chr1 (273-314)||(17055898-17055939)
chr1 (314-383)||(41032607-41032676)
chr1 (314-382)||(21846109-21846177)
chr1 (274-317)||(18891572-18891615)
chr1 (314-380)||(30619168-30619234)
chr1 (314-383)||(16125289-16125358)
chr1 (314-383)||(17869584-17869653)
chr1 (326-383)||(19009782-19009839)
chr1 (326-383)||(23528894-23528951)
chr1 (273-317)||(27917348-27917391)
chr1 (319-383)||(47786089-47786153)
chr1 (314-357)||(18228490-18228533)
chr1 (273-307)||(39845218-39845252)
chr1 (314-383)||(32881546-32881615)
chr1 (335-383)||(12513518-12513566)
chr1 (326-382)||(14074318-14074374)
[»] chr8 (19 HSPs)
chr8 (314-382)||(17647223-17647291)
chr8 (320-383)||(6811051-6811114)
chr8 (314-383)||(15231847-15231916)
chr8 (314-383)||(17566324-17566393)
chr8 (314-383)||(22910037-22910106)
chr8 (314-383)||(29384146-29384215)
chr8 (273-322)||(26575096-26575147)
chr8 (314-383)||(7489117-7489186)
chr8 (314-383)||(23142400-23142469)
chr8 (314-358)||(8582269-8582313)
chr8 (314-382)||(15294895-15294963)
chr8 (314-382)||(15475264-15475332)
chr8 (325-383)||(15761192-15761250)
chr8 (325-383)||(40541654-40541712)
chr8 (326-379)||(5922286-5922339)
chr8 (326-383)||(24414121-24414178)
chr8 (326-383)||(45403267-45403324)
chr8 (277-317)||(1018159-1018199)
chr8 (327-383)||(19704291-19704347)
[»] chr6 (18 HSPs)
chr6 (314-381)||(4841665-4841732)
chr6 (326-383)||(11327396-11327453)
chr6 (273-317)||(3573868-3573912)
chr6 (326-383)||(19748571-19748628)
chr6 (326-383)||(20432427-20432484)
chr6 (332-381)||(20981363-20981412)
chr6 (273-317)||(18490617-18490661)
chr6 (327-383)||(26053130-26053186)
chr6 (327-383)||(26073183-26073239)
chr6 (319-383)||(30912240-30912304)
chr6 (326-381)||(15527946-15528001)
chr6 (273-317)||(31407401-31407447)
chr6 (314-383)||(3573734-3573803)
chr6 (326-383)||(7223753-7223810)
chr6 (326-383)||(7918184-7918241)
chr6 (326-383)||(22498274-22498331)
chr6 (314-383)||(23898037-23898105)
chr6 (273-306)||(28669422-28669455)
[»] scaffold0150 (1 HSPs)
scaffold0150 (325-383)||(33175-33233)
[»] scaffold0534 (1 HSPs)
scaffold0534 (314-383)||(896-965)
[»] scaffold0115 (1 HSPs)
scaffold0115 (273-322)||(34962-35011)
[»] scaffold0079 (1 HSPs)
scaffold0079 (329-383)||(14760-14814)
[»] scaffold0603 (1 HSPs)
scaffold0603 (325-382)||(8794-8851)
[»] scaffold0016 (1 HSPs)
scaffold0016 (326-382)||(56260-56316)
[»] scaffold0028 (1 HSPs)
scaffold0028 (325-383)||(145825-145883)
[»] scaffold0510 (1 HSPs)
scaffold0510 (314-383)||(38-106)
[»] scaffold0036 (1 HSPs)
scaffold0036 (281-317)||(37067-37103)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 24916089 - 24915791
Alignment:
Q  7 acttgctacgtaagttaccattctcttttacctgttctttattagttaactaacaataatttaagttataaagaaataatcatcataatataaattgaaa 106  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||    
T  24916089 acttgctacgtaagttactcttctcttttacctgttctttattagttaactaacaataatttaagttataaataaatagtcatcataatataaatttaaa 24915990  T
Q  107 gataattgtcaaatagaactggaaaagtgaaaagcacgctgaattagtttagggcttgagataagaaaggcagtatataattgcatcaagatcgtacaaa 206  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||  |||||||||||||||||    
T  24915989 gataattgtcaaatagaactggaaaagtgaaaagcacactgaattagtttagggcttgagataagaaaggcag--tataatcacatcaagatcgtacaaa 24915892  T
Q  207 atcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaac 306  Q
    ||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||       ||||||||| ||||||||||||||||||||||||||    
T  24915891 atcgtaaaatccaaacaaaaacgcagagttttaaagagtttcgaagaattttgtccatttttttaatcatttacgtataagtattttgtggactttaaac 24915792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 8329947 - 8329878
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  8329947 tttacgatttcttatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgattttac 8329878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 4574968 - 4575025
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||||||||||||    
T  4574968 tatatcgattctacaaaagtagttgagtagaattctttgattttgattgcgattttac 4575025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 26565451 - 26565382
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||  || |||||||||| |||||||||    
T  26565451 tttacgattttttatattgattctacaaaagtagttgagtaaaatccttcgattttgattacgattttac 26565382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 26565569 - 26565525
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26565569 tcatttatgtataagtattttgtggactttaaactgagtcattta 26565525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 8343705 - 8343644
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgc 375  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||  || ||||||||||||    
T  8343705 tttacgattttttatatcaattctacaaaagtagttgagtaaaatacttcgattttgattgc 8343644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 8346434 - 8346365
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| ||||||| ||||||||||||||||||| ||||||  |||||||||||||||||| ||||    
T  8346434 tttatgatttcttatatcaattctacaaaagtagttgagtaaaatcctttgattttgattgcgatattac 8346365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 39182382 - 39182451
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||||||||||||||||||||||| ||||||  || ||||||| ||||||||||||    
T  39182382 tttacaatttcttatatcgattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 39182451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 21157756 - 21157656
Alignment:
Q  221 acaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaactgagtcatttacga 320  Q
    |||||| |||||  ||||||||  |||||||| ||||||||||       | ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  21157756 acaaaatcgcagaattttaaaggattttgaagaattttgtccagtttttgagtcatttatgtataagtattttgtagactttaaac-gagtcatttacga 21157658  T
Q  321 tt 322  Q
    ||    
T  21157657 tt 21157656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 21846350 - 21846282
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||  || ||||||| |||||||||||    
T  21846350 tttacgatttcttatatcgattctataaaagtagttgattaaaatccttcgattttggttgcgatttta 21846282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 17811574 - 17811643
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||| ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  17811574 tttacaattttctatatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttac 17811643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 22687166 - 22687101
Alignment:
Q  318 cgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||  |||||| ||| ||||||||    
T  22687166 cgatttcttatatcgattctacaaaagtagttgagtaaaattcttcaattttggttgtgattttac 22687101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 30294323 - 30294405
Alignment:
Q  235 ttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||| |||||||| |||||||||||       | |||||||||||||| |||||||||||||||| |||| ||||||||    
T  30294323 ttttaaagggttttgaaagattttgtccatttttttagtcatttatgtataactattttgtggactttatactgggtcattta 30294405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 8329882 - 8329814
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||  ||  ||||||||||| ||||||    
T  8329882 tttacgatttcttatatcaattctacaaaagtagttgagtaaaatccttcaattttgattgcaatttta 8329814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 24725363 - 24725307
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||||||||||||||||  |||| ||||||  ||||||||||||||||||||||    
T  24725363 tatatcgattctacaaaagtccttgagtaaaatcctttgattttgattgcgatttta 24725307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 14055489 - 14055552
Alignment:
Q  320 attttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| |||||||| |||||||||||||||||| ||||||  || ||||||| ||||||||||||    
T  14055489 atttcttatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 14055552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 14365517 - 14365580
Alignment:
Q  320 attttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| |||||||| |||||||||||||||||| ||||||  || ||||||| ||||||||||||    
T  14365517 atttcttatatcgtttctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 14365580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 4247582 - 4247651
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| ||||||||||||||||||| |  |||| ||||||  ||||| |||||||||||||||||    
T  4247582 tttatgatttcttatatcgattctacaaaaatccttgagtaaaatcctttgaatttgattgcgattttac 4247651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 7730262 - 7730193
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||| ||| ||||||||||||||| |||||  ||| ||||||| ||||||||||||    
T  7730262 tttacaatttcttatatcaattatacaaaagtagttgagtaaaaccattcgattttggttgcgattttac 7730193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 21157584 - 21157527
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||||||||||||||||||||||||||  ||  |||||||||| ||||||||    
T  21157584 tatatagattctacaaaagtagttgaataaaatccttcaattttgattgagattttac 21157527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 44944748 - 44944679
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||||||||||||||||  || | ||||||| || |||||| |||||||||||||    
T  44944748 tttacaatttcttatatcgattctacaaaagtccttaagtaaaattgttcgattttaattgcgattttac 44944679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 23618317 - 23618265
Alignment:
Q  329 atcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttt 381  Q
    |||||||||||||||||  |||| ||||||| || ||||||||||||||||||    
T  23618317 atcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgatttt 23618265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 20570782 - 20570720
Alignment:
Q  320 attttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||| |||||||||||||||||||||  |||| ||||||  ||  ||||||||||||||||||    
T  20570782 atttcttatatcgattctacaaaagtccttgagtaaaatctttcaattttgattgcgatttta 20570720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 1977775 - 1977843
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| |||||||||||||| |||| || |||| ||||||  || ||||||||||||||||||||    
T  1977775 tttaggatttcttatatcgattctaaaaaa-taattgagtaaaatccttcgattttgattgcgattttac 1977843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 5715523 - 5715580
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||   | ||||||||||||||||||||    
T  5715523 tatatcgattctacaaaagtccttgagtaaaatccctcgattttgattgcgattttac 5715580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 8346368 - 8346308
Alignment:
Q  315 ttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgc 375  Q
    ||||||||| ||||||| |||||| |||||||||||| ||||||  || ||||||| ||||    
T  8346368 ttacgatttcttatatcaattctataaaagtagttgagtaaaatccttcgattttgtttgc 8346308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 27509315 - 27509271
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaat 358  Q
    ||||| |||| |||||||||||||| |||||||||||| ||||||    
T  27509315 tttacaatttcttatatcgattctataaaagtagttgagtaaaat 27509271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 317
Target Start/End: Complemental strand, 18459721 - 18459594
Alignment:
Q  190 catcaagatcgtacaaaatcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagta 289  Q
    |||||| |||| |||||||||| ||||  | ||||||  ||||| |||||||  ||||||||||||||||||||       |||||||||||||||||||    
T  18459721 catcaaaatcgcacaaaatcgtgaaattcatacaaaattgcaggattttaaacggttttgaaggattttgtccatttttgtaatcatttatgtataagta 18459622  T
Q  290 ttttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||| ||||||||||    
T  18459621 ttttgtggactttaaaccgagtcattta 18459594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 37240464 - 37240534
Alignment:
Q  314 tttacgattt-tttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  37240464 tttacgatttctttatatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttac 37240534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 7044989 - 7045057
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||    
T  7044989 tttacgatttcttatatcgattattcaaaagtagttgagtaaaatcattcgattttgattgcgatttta 7045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 7803203 - 7803247
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7803203 tcatttatgtataagtattttgtggactttaaactgagtcattta 7803247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 7825157 - 7825201
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7825157 tcatttatgtataagtattttgtggactttaaactgagtcattta 7825201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 10143137 - 10143195
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||| ||||||||||||||  || ||||||||||||||||||||    
T  10143137 ttatatcgattctacaaaattagttgaataaaatccttcgattttgattgcgattttac 10143195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 8011211 - 8011114
Alignment:
Q  219 aaacaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||| |||||| |||||||| ||||||||| |||||||| |       | ||||||||||||||||||||||||||||||||||| | |||||||    
T  8011211 aaacaaaatcgcaggattttaaagggttttgaagaattttgtc-atttctttattcatttatgtataagtattttgtggactttaaactaattcattta 8011114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 7815754 - 7815798
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  7815754 tcatttatgtataagtattatgtggactttaaactgagtcattta 7815798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 8011039 - 8010970
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||||||||| |||| ||||||| ||||||  || ||||||||||||||||||||    
T  8011039 tttacaatttcttatatcgattctataaaaatagttgagtaaaatccttcgattttgattgcgattttac 8010970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 10394836 - 10394905
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||  |||| ||||||||||||||||||||| |||| |  || ||||||||||||||||||||    
T  10394836 tttacgatttcctataccgattctacaaaagtagttgagtaaagtccttcgattttgattgcgattttac 10394905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 7044870 - 7044914
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  7044870 tcatttatgtataagtatcttgtcgactttaaactgagtcattta 7044914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 9149745 - 9149701
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  9149745 tcatttatgtataagtattttttggactttaagctgagtcattta 9149701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 10394621 - 10394754
Alignment:
Q  185 aattgcatcaagatcgtacaaaatcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtcc-annnnnnnaatcatttatgta 283  Q
    |||||||| || |||| |||||||| | ||||| |  ||||| |||||| |||||||||||||||||||||||  |||         |||||||||||||    
T  10394621 aattgcattaaaatcgcacaaaatcattaaatccattcaaaatcgcaggattttaaagagttttgaaggatttcttcctcttttattaatcatttatgta 10394720  T
Q  284 taagtattttgtggactttaaactgagtcattta 317  Q
    |||| |||||||| | ||||||| ||||||||||    
T  10394721 taagaattttgtgaattttaaacggagtcattta 10394754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 46664308 - 46664265
Alignment:
Q  274 catttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||    
T  46664308 catttatgtataagtatgttgcggactttaaactgagtcattta 46664265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 4156909 - 4157004
Alignment:
Q  221 acaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||| |||| | ||||||||  |||||||||||||||||||       | |||||||||||||||||||||||| ||||||||| || |||||||    
T  4156909 acaaaatcgcaagattttaaaggattttgaaggattttgtccatttttt-attcatttatgtataagtattttgtgaactttaaaccgaatcattta 4157004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 263
Target Start/End: Complemental strand, 6347081 - 6347015
Alignment:
Q  197 atcgtacaaaatcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtcca 263  Q
    |||| |||||||||| ||||  | |||||| |||||| |||||||| ||||||||||||||||||||    
T  6347081 atcgcacaaaatcgtgaaattcacacaaaatcgcaggattttaaagggttttgaaggattttgtcca 6347015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 55476225 - 55476283
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  55476225 ttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 55476283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 4157269 - 4157322
Alignment:
Q  330 tcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||| ||||||  || ||| ||||||||||||||||    
T  4157269 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttac 4157322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 4157556 - 4157609
Alignment:
Q  330 tcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||| ||||||  || ||| ||||||||||||||||    
T  4157556 tcgattctacaaaagtagttgagtaaaatctttcgatcttgattgcgattttac 4157609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 5361868 - 5361799
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||  |||||||||||||||||||||||||| |||||   || ||||||| |||| |||||||    
T  5361868 tttacgatttcatatatcgattctacaaaagtagttgagtaaaacccttcgattttgtttgcaattttac 5361799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 6346858 - 6346789
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||  ||||||||||||||||||| ||||||  || ||||||||||| ||||||||    
T  6346858 tttacaatttcttatattcattctacaaaagtagttgagtaaaatccttcgattttgattgtgattttac 6346789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 7452732 - 7452800
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||  ||||| |||||||||||||||||||| | ||||  || ||||||||||||||||||||    
T  7452732 tttacgatttcgtatattgattctacaaaagtagttgagt-aaatccttcgattttgattgcgattttac 7452800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 9149625 - 9149556
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  ||  ||||||||||  |||||||    
T  9149625 tttacgatttcttatatcgattctacgaaagtagttgagtaaaatccttcaattttgattggaattttac 9149556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 23064852 - 23064795
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||||||||||  ||  |||||||||||||||||||    
T  23064852 tatatcgattctacaaaagtccttgaataaaatccttcaattttgattgcgattttac 23064795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 7452617 - 7452660
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattt 316  Q
    |||||| ||||||||| ||||||||| |||||||||||||||||    
T  7452617 tcatttttgtataagtgttttgtggaatttaaactgagtcattt 7452660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 24719801 - 24719868
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttt 381  Q
    |||||||||| |||||||||||||||||||||| | || ||||||  || |||| ||||| |||||||    
T  24719801 tttacgatttcttatatcgattctacaaaagtaatcgagtaaaatccttcgattgtgatttcgatttt 24719868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 22060753 - 22060719
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaact 307  Q
    ||||||||||||||||||||||||||||| |||||    
T  22060753 tcatttatgtataagtattttgtggacttgaaact 22060719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 5943162 - 5943093
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||| | ||||||||||||||||||||| ||||||  ||  |||||  ||||||||||||    
T  5943162 tttacgatttcttaaaccgattctacaaaagtagttgagtaaaatccttcaattttacttgcgattttac 5943093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 9770350 - 9770407
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||   |||| ||||||  || ||||||||||||||||||||    
T  9770350 tatatcgattctacaaaagaccttgagtaaaatccttcgattttgattgcgattttac 9770407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 13286170 - 13286239
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  13286170 tttacgatttcttatatcgattctacaaaagtagttgagtaaaatcttttgattttgattgcgattttac 13286239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 22137503 - 22137573
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttact 384  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||    
T  22137503 tttacgatttcttatatcgattctacaaaagtagttgagtaaaattctttgattttggttgtgattttact 22137573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 6136472 - 6136403
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||    
T  6136472 tttacgatttcttatatcgattctataaaagtagttgagtaaaatcttttgattttgattgcgattttac 6136403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 3449202 - 3449144
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  3449202 ttatatcgattctacaaaagtagttgaataaaatcattcgattttggttgcgattttac 3449144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 27676662 - 27676730
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||  || |||||||||||||||||||    
T  27676662 tttacgatttcttatatcgattttacaaaagtagttgagtaaaatctttcgattttgattgcgatttta 27676730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 17064533 - 17064602
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||| |||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  17064533 tttacaatttcttatattgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttac 17064602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 15806458 - 15806412
Alignment:
Q  271 aatcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  15806458 aatcatttatgtataagtatttcgtggactttaaaccgagtcattta 15806412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 21963657 - 21963727
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttact 384  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||| ||| |||||| ||| |||||||||    
T  21963657 tttacgatttcttatatcgattctataaaagtaattgagtaaaattctttaattttggttgtgattttact 21963727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 21986093 - 21986163
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttact 384  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||| ||| |||||| ||| |||||||||    
T  21986093 tttacgatttcttatatcgattctataaaagtaattgagtaaaattctttaattttggttgtgattttact 21986163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 24620100 - 24620031
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||| ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  24620100 tttacaattttctatatcgattctacaaaagtctttgagtaaaatccttcgattttgattgcgattttac 24620031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 25870225 - 25870156
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||||||||||||||  ||||||| ||||||  |||||||||| ||||||||||||    
T  25870225 tttacaatttcttatatcgattctacaaacttagttgagtaaaatcctttgattttggttgcgattttac 25870156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 28746014 - 28746071
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||| || ||||||||||||||||||||    
T  28746014 tatatcgattctacaaaagttcttgagtaaaattcttcgattttgattgcgattttac 28746071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 42697074 - 42697143
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||  ||  |||||  ||||||||||||    
T  42697074 tttatgatttcttatatcgattctacaaaagtagttgaataaaatccttcaattttagttgcgattttac 42697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 10872618 - 10872550
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||  ||  ||||||||||||||||||    
T  10872618 tttacgatttcttatatcgattcttcaaaagtagtttagtaaaatccttcaattttgattgcgatttta 10872550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 10872963 - 10872842
Alignment:
Q  197 atcgtacaaaatcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaa-tcatttatgtataagtattttgt 295  Q
    |||| |||||||| ||||||| | |||||| | || | |||||||  ||||||||||||||||||||        | |||||||||| ||||||||||||    
T  10872963 atcgcacaaaatcttaaaatccatacaaaatcacaagattttaaaaggttttgaaggattttgtccattttttttagtcatttatgtttaagtattttgt 10872864  T
Q  296 ggactttaaactgagtcattta 317  Q
    ||||||||||||  ||||||||    
T  10872863 ggactttaaactatgtcattta 10872842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 22355955 - 22355900
Alignment:
Q  328 tatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||| |||||||||  |||||||||||  |||||||||||||||||||||||    
T  22355955 tatcgattttacaaaagtccttgaataaaatcttttgattttgattgcgattttac 22355900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 8592290 - 8592233
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  8592290 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 8592233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 28135988 - 28136057
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||| ||| ||||||||||||||| ||||||  || ||||||||| ||||||||||    
T  28135988 tttacaatttcttatatcaattttacaaaagtagttgagtaaaatccttcgattttgatagcgattttac 28136057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 24649674 - 24649597
Alignment:
Q  228 cgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaa 305  Q
    |||||| |||||||| ||||||||| ||||| ||||       | |||||||||||||||||||||||| ||||||||    
T  24649674 cgcaggattttaaagggttttgaagaattttatccatttttttagtcatttatgtataagtattttgtgaactttaaa 24649597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 27676544 - 27676587
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  27676544 tcatttatgtataagtattttgtgga-tttaaaccgagtcattta 27676587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 17796805 - 17796860
Alignment:
Q  328 tatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||||| ||||||  || |||||| ||||| |||||||    
T  17796805 tatcgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttac 17796860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Original strand, 19105245 - 19105300
Alignment:
Q  328 tatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||||| ||||||  || |||||| ||||| |||||||    
T  19105245 tatcgattctacaaaagtagttgagtaaaatgcttcgattttaattgcaattttac 19105300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 20766792 - 20766735
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||| ||||||   |||| ||||||| || ||||||||||||||||||||    
T  20766792 tatatcgattctccaaaagcccttgagtaaaatttttcgattttgattgcgattttac 20766735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 41671426 - 41671474
Alignment:
Q  335 tctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||| ||||||  || ||||||| ||||||||||||    
T  41671426 tctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 41671474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 93608 - 93539
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||    
T  93608 tttacgatttattatatcgattctacaaaagtagttgaataaaatccttcgattttgattacgattttac 93539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 25539219 - 25539123
Alignment:
Q  221 acaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||| |||||| |||||||| |||||| || ||||||||||       | |||||||| ||||||||||||||||||||||||||||||||||||    
T  25539219 acaaaatcgcaggattttaaagggttttgtagaattttgtccatttttttagtcatttatttataagtattttgtggactttaaactgagtcattta 25539123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 25539048 - 25538979
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||  ||| |||||||||||||||||||    
T  25539048 tttacaattttttatatcgattctacaaaagtagttcagtaaaatcctttaattttgattgcgattttac 25538979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 16767011 - 16767079
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||  ||  ||||||||||||||||||    
T  16767011 tttacgatttcttatatcgattctataaaagtagttgagtaaaatccttcaattttgattgcgatttta 16767079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 27406898 - 27406942
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  27406898 tcatttatgtatatgtattttgtggactttaaactgagtcattta 27406942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 19491987 - 19492083
Alignment:
Q  221 acaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||| |||||| |||||||| ||||||||| ||||| ||||       | ||||||||||||||||||| |||||||||||||| |||| |||||    
T  19491987 acaaaatcgcaggattttaaagggttttgaagaattttatccattttgttagtcatttatgtataagtattctgtggactttaaacagagttattta 19492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 19245827 - 19245884
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||||| | ||||||  || ||||||||||||||||||||    
T  19245827 tatatcgattctacaaaagtagttaagtaaaatccttagattttgattgcgattttac 19245884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 19262219 - 19262150
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  19262219 tttacaatttcttatatcgattctacaaaagtccttgagtaaaatctttcgattttgattgcgattttac 19262150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 20063961 - 20064018
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||| || ||||||||||||||||||||    
T  20063961 tatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttac 20064018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 8428448 - 8428516
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||||||||||| |||| |||||||||||| |||||||  |||||  || |||||||||||||||||||    
T  8428448 tttacgatttttgatattgattctacaaaaatagttgagcaaaatccttcgattttgattgcgatttta 8428516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 13502986 - 13502947
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtc 312  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  13502986 tcatttatgtataagtattttgtggagtttaaactgagtc 13502947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 974576 - 974633
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  974576 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 974633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 27407017 - 27407086
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| |||||| |||| | ||||||||||||| ||||||| || ||||||||||||||| ||||    
T  27407017 tttatgatttcttatattgattatccaaaagtagttgagtaaaattcttggattttgattgcgatattac 27407086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 29661095 - 29661164
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| |||||||||| |||||||||||||| |||||||   || |||||| |||||| ||||||    
T  29661095 tttacgatttcttatatcgatactacaaaagtagtttaataaaaaccttcgattttaattgcggttttac 29661164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 1405021 - 1405077
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||||||||||||||||  |||| ||||||  || |||||||||||||||||||    
T  1405021 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 1405077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 16766894 - 16766937
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||    
T  16766894 tcatttatgt-taagttttttgtggactttaaactgagtcattta 16766937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 21869212 - 21869156
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||||||||||||||||  |||||||||||  || |||||| ||||||||||||    
T  21869212 tatatcgattctacaaaagtcattgaataaaatccttcgattttaattgcgatttta 21869156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 30433053 - 30433109
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||||||||| ||||||  |||| |||||| ||| |||||||||||||||||||    
T  30433053 tatatcgattctataaaagtccttgagtaaaatcattcgattttgattgcgatttta 30433109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 15627851 - 15627898
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcatttacga 320  Q
    |||||||| ||||||||||||| | |||||||||| ||||||||||||    
T  15627851 tcatttatatataagtattttgcgcactttaaactaagtcatttacga 15627898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 27523984 - 27523930
Alignment:
Q  329 atcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  27523984 atcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 27523930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 35565860 - 35565788
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttg---aataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| ||||||||||||||||||||||||||   ||||||||  || ||||||  ||||||||||||    
T  35565860 tttatgatttcttatatcgattctacaaaagtagttgagtaataaaatccttcgattttagttgcgattttac 35565788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 13502576 - 13502507
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| |||||| |||||||||||| ||||||| ||| ||  ||  ||||||||| |||||||||    
T  13502576 tttacgatttcttatatagattctacaaaaatagttgactaatatccttcaattttgattacgattttac 13502507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 31237879 - 31237810
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||| |||||||||| |||||||||  |||| ||||||  || ||| ||||||||||||||||    
T  31237879 tttacaattttctatatcgattttacaaaagtccttgagtaaaatccttcgatattgattgcgattttac 31237810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 24648239 - 24648304
Alignment:
Q  318 cgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||| |||||||||||||||||||| ||||||  ||||||||||||| |||||||||    
T  24648239 cgattttttatattgattctacaaaagtagttgagtaaaatcctttgattttgattacgattttac 24648304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 13349556 - 13349512
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  13349556 tcatttatgtataagtattttgtggacttcaaactgagtcattta 13349512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 24648124 - 24648168
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  24648124 tcatttatgtataagtattttgtggactttaaattgagtcattta 24648168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 43235094 - 43235162
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||||  || |||||||||||||||||||    
T  43235094 tttacaattttttatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 43235162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 18051424 - 18051371
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatt 379  Q
    ||||||||||||||||||||  || ||||||||| |||||||||||||||||||    
T  18051424 tatatcgattctacaaaagtccttcaataaaattctttgattttgattgcgatt 18051371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 43005762 - 43005693
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||  ||||||||||||||||||| |||||| ||||||  ||  |||||||||||||||||||    
T  43005762 tttacgatttcctatatcgattctacaaaagaagttgagtaaaatctttcaattttgattgcgattttac 43005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 17624851 - 17624896
Alignment:
Q  338 acaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||    
T  17624851 acaaaagtagttgagtaaaatcttttgattttgattgcgattttac 17624896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 23172319 - 23172265
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattt 380  Q
    ||||||||||||||||||||  |||| ||||||| || |||||||||| ||||||    
T  23172319 tatatcgattctacaaaagtctttgagtaaaattcttcgattttgattacgattt 23172265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 26021411 - 26021453
Alignment:
Q  221 acaaaaacgcagggttttaaagagttttgaaggattttgtcca 263  Q
    |||||| |||||| |||||||| ||||||||||||||||||||    
T  26021411 acaaaatcgcaggattttaaagggttttgaaggattttgtcca 26021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 30804032 - 30804074
Alignment:
Q  275 atttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||| || || |||||||||||||||    
T  30804032 atttatgtataagtattttgtagaattgaaactgagtcattta 30804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 41427657 - 41427714
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  | || ||||||  || ||||||||||||||||||||    
T  41427657 tatatcgattctacaaaagtcctcgagtaaaatccttcgattttgattgcgattttac 41427714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 19579169 - 19579237
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||| ||||| |||| |||||||||||||||  |||| | ||||  || |||||||||||||||||||    
T  19579169 tttacaattttctataacgattctacaaaagtccttgagtgaaatccttcgattttgattgcgatttta 19579237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 30799499 - 30799543
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||| || |||| ||||| |||||||||    
T  30799499 tcatttatgtataagtattttatgaacttgaaactaagtcattta 30799543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 41688569 - 41688501
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||| ||||| ||||||||||||||||||||  || | ||||||  || ||||||| |||||||||||    
T  41688569 tttacaattttctatatcgattctacaaaagtccttaagtaaaatccttcgattttggttgcgatttta 41688501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 48803 - 48680
Alignment:
Q  189 gcatcaagatcgtacaaaatcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtccannnnnnnaatcatttatgtataagt 288  Q
    ||||||| |||| |||||| ||| ||||  | |||||| |||| | |||||| | ||||||||||||||||| ||       | |||||||||||||| |    
T  48803 gcatcaaaatcgcacaaaaacgtgaaattcatacaaaaccgcatgattttaatgggttttgaaggattttgttcatttttctagtcatttatgtataatt 48704  T
Q  289 attttgtggactttaaactgagtc 312  Q
    ||||||||||||||||||||||||    
T  48703 attttgtggactttaaactgagtc 48680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 61217 - 61148
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||  |||||||||||||||||||||||| | ||||||| || ||||||||||| ||||||||    
T  61217 tttacgatttcatatatcgattctacaaaagtagttaagtaaaattcttcgattttgattgtgattttac 61148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 61401 - 61323
Alignment:
Q  185 aattgcatcaagatcgtacaaaatcgtaaaatctaaacaaaaacgcagggttttaaagagttttgaaggattttgtcca 263  Q
    ||||||||||| |||| |||||| ||| ||||  | |||||| |||||| |||||| | ||||||||||||||||||||    
T  61401 aattgcatcaaaatcgcacaaaaacgtgaaattcatacaaaaccgcaggattttaatgggttttgaaggattttgtcca 61323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 48565 - 48497
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||| || || |||||||||||||||||||||| | ||||||  || ||||||||||| |||||||    
T  48565 tttacgacttcttttatcgattctacaaaagtagttaagtaaaatccttcgattttgattgagatttta 48497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 309
Target Start/End: Original strand, 61268 - 61299
Alignment:
Q  278 tatgtataagtattttgtggactttaaactga 309  Q
    ||||||||||||||||||||||||||||||||    
T  61268 tatgtataagtattttgtggactttaaactga 61299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 48616 - 48648
Alignment:
Q  278 tatgtataagtattttgtggactttaaactgag 310  Q
    ||||||||||| |||||||||||||||||||||    
T  48616 tatgtataagtgttttgtggactttaaactgag 48648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 17055822 - 17055753
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| || |||||||||||||||||||||||| ||||||  || ||||||||||||||||||||    
T  17055822 tttacaatttcttgtatcgattctacaaaagtagttgagtaaaatccttcgattttgattgcgattttac 17055753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 13100416 - 13100485
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||| |||||||||||||||||| ||  |||| ||||||  |||||||||||||||||||||||    
T  13100416 tttaagatttcttatatcgattctacaaatgtccttgagtaaaatcctttgattttgattgcgattttac 13100485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 314
Target Start/End: Complemental strand, 17055939 - 17055898
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcat 314  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  17055939 tcatttatgtataagtattttgtggactttaaattgagtcat 17055898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 41032676 - 41032607
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||||||||||||||| ||||||| ||||||| || ||||||  ||||||||||||    
T  41032676 tttacaatttcttatatcgattctacaaaactagttgagtaaaattcttcgattttagttgcgattttac 41032607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 21846177 - 21846109
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||| |||| |||||||||||||||||||||  |||| ||||||  || |||||||||||||||||||    
T  21846177 tttacaatttcttatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttta 21846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 18891615 - 18891572
Alignment:
Q  274 catttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  18891615 catttatgtataagtattttgtggaatttaaactgaatcattta 18891572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 30619168 - 30619234
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattt 380  Q
    ||||| |||||| ||||||||||||||||||||||||| ||||||  || ||||||  |||||||||    
T  30619168 tttacaatttttcatatcgattctacaaaagtagttgagtaaaatccttcgatttttgttgcgattt 30619234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 16125358 - 16125289
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||||||||||||| ||  |||| ||||||  || ||||||||||||||||||||    
T  16125358 tttacaatttcttatatcgattctacaaatgtccttgagtaaaatccttcgattttgattgcgattttac 16125289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 17869653 - 17869584
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||||||| || ||||||| ||||||  |||| ||||||  |||||||||||||||||||||||    
T  17869653 tttacaattttttacattgattctataaaagtccttgagtaaaatcctttgattttgattgcgattttac 17869584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 19009839 - 19009782
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| |||||||||  |||| ||||||  |||||||||||||||||||||||    
T  19009839 tatatcgattttacaaaagttcttgagtaaaatcctttgattttgattgcgattttac 19009782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 23528894 - 23528951
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  23528894 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 23528951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 27917391 - 27917348
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||    
T  27917391 tcatttatgtataagtattttgt-gactttaaactgagttattta 27917348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 47786089 - 47786153
Alignment:
Q  319 gattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||||| ||||||||||||||||||| ||||||  || ||||||| ||| ||||||||    
T  47786089 gatttcttatatcaattctacaaaagtagttgagtaaaatccttcgattttggttgtgattttac 47786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 18228490 - 18228533
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaa 357  Q
    |||||||||| |||||||||||||||||||| |||||| |||||    
T  18228490 tttacgatttcttatatcgattctacaaaagaagttgagtaaaa 18228533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 307
Target Start/End: Complemental strand, 39845252 - 39845218
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaact 307  Q
    |||||||| ||||||||||||||||||||||||||    
T  39845252 tcatttatttataagtattttgtggactttaaact 39845218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 32881546 - 32881615
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||||||||||||| |||||||| ||||||  || |||||   ||||||||||||    
T  32881546 tttacaatttcttatatcgattctacaaacgtagttgagtaaaatccttcgatttcagttgcgattttac 32881615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 12513518 - 12513566
Alignment:
Q  335 tctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||| |||||||||| ||||||  |||||||||| ||||||||||||    
T  12513518 tctacagaagtagttgagtaaaatcctttgattttggttgcgattttac 12513566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 14074374 - 14074318
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||| |||||||    
T  14074374 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgtgatttta 14074318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 17647223 - 17647291
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||| |||| ||||||||||||||||||| ||||||| ||||||  || |||||||||||||||||||    
T  17647223 tttacaatttcttatatcgattctacaaaactagttgagtaaaatccttcgattttgattgcgatttta 17647291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 383
Target Start/End: Original strand, 6811051 - 6811114
Alignment:
Q  320 attttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||| ||||||| ||||||||||||||||||| ||||||| || ||||||| ||||||||||||    
T  6811051 atttcttatatctattctacaaaagtagttgattaaaattcttcgattttggttgcgattttac 6811114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 15231847 - 15231916
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||  |  ||||||  ||||||||||||    
T  15231847 tttacaattttttatatcgattctacaaaagtagttgagtaaaatcgtacgattttagttgcgattttac 15231916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 17566324 - 17566393
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||  |||||||||||||||||| ||||||| || |||||||||||| |||||||    
T  17566324 tttacaatttcttatatctgttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttac 17566393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 22910106 - 22910037
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||  ||  |||| | ||||||||||||    
T  22910106 tttacgatttcttatatcgattctacaaaaatagttgaataaaatccttcaatttcggttgcgattttac 22910037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 29384215 - 29384146
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||| ||||||  ||||||||||||||||||| ||||||  || ||||||| ||||||||||||    
T  29384215 tttacgatttcttatattaattctacaaaagtagttgagtaaaatccttcgattttggttgcgattttac 29384146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 26575147 - 26575096
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaac--tgagtcatttacgatt 322  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  26575147 tcatttatgtataagtattttgtggactttaaactttgagtcatttatgatt 26575096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 7489186 - 7489117
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||| ||||||||||||||||||||  |||| ||||||  |  ||||||||||||||||||||    
T  7489186 tttacaattttctatatcgattctacaaaagtccttgagtaaaatcctccgattttgattgcgattttac 7489117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 23142400 - 23142469
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||||||||||||||||  |||| |||||| ||| |||||  |||||||||||||    
T  23142400 tttacaatttcttatatcgattctacaaaagtttttgactaaaatcattcgatttaaattgcgattttac 23142469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 8582269 - 8582313
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaat 358  Q
    |||||||||| ||||||| ||||||||||||||||||| ||||||    
T  8582269 tttacgatttcttatatcaattctacaaaagtagttgagtaaaat 8582313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 15294895 - 15294963
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||| ||||| |||||| ||||||||||||||  |||| ||||||  || |||||||||||||||||||    
T  15294895 tttaagatttcttatatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 15294963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 15475264 - 15475332
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    |||| ||||| |||||| ||||||||||||||  |||| ||||||  || |||||||||||||||||||    
T  15475264 tttaagatttcttatatggattctacaaaagttcttgagtaaaatccttcgattttgattgcgatttta 15475332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 15761250 - 15761192
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||||| |||| ||||||  || |||||  |||||||||||||    
T  15761250 ttatatcgattctacaaaagtaattgagtaaaatccttcgatttatattgcgattttac 15761192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 383
Target Start/End: Complemental strand, 40541712 - 40541654
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||| ||||  |||||||||||  ||  |||||||||||||||||||    
T  40541712 ttatatcgattctacagaagtccttgaataaaatctttcaattttgattgcgattttac 40541654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 5922286 - 5922339
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatt 379  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||    
T  5922286 tatatcgattctacaaaagttcttgagtaaaatccttcgattttgattgcgatt 5922339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 24414178 - 24414121
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||| |  |||| ||||||  || ||||||||||||||||||||    
T  24414178 tatatcgattctacaaaaattcttgagtaaaatccttcgattttgattgcgattttac 24414121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 45403267 - 45403324
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  || | ||||||  || ||||||||||||||||||||    
T  45403267 tatatcgattctacaaaagtctttaagtaaaatccttcgattttgattgcgattttac 45403324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 1018199 - 1018159
Alignment:
Q  277 ttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||||||||| ||||||||| || ||||||||    
T  1018199 ttatgtataagtattttgttgactttaaagtgggtcattta 1018159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 19704347 - 19704291
Alignment:
Q  327 atatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||| |||  |||| |||| |  |||||||||||||||||||||||    
T  19704347 atatcgattctacaacagtccttgagtaaattcctttgattttgattgcgattttac 19704291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 4841732 - 4841665
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttt 381  Q
    |||||||||| ||||  ||||||||||||||||||||| ||||||  |||||||||||||| ||||||    
T  4841732 tttacgatttcttatcccgattctacaaaagtagttgagtaaaatcctttgattttgattgtgatttt 4841665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 11327453 - 11327396
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||| || ||||||||||||||||||||    
T  11327453 tatatcgattctacaaaagtccttgagtaaaattcttcgattttgattgcgattttac 11327396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 3573912 - 3573868
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||    
T  3573912 tcatttatgtttaagtattttgtggactttaatctgagtcattta 3573868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 19748571 - 19748628
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||||    
T  19748571 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgattttac 19748628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 20432484 - 20432427
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||| ||||| | ||||||| ||  |||||||||||||||||||    
T  20432484 tatatcgattctacaaaactagttaagtaaaattcttcaattttgattgcgattttac 20432427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 20981363 - 20981412
Alignment:
Q  332 gattctacaaaagtagttgaataaaattatttgattttgattgcgatttt 381  Q
    ||||||||||||| |||||| ||||||| ||||||||||||| |||||||    
T  20981363 gattctacaaaagcagttgagtaaaattctttgattttgattacgatttt 20981412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 18490661 - 18490617
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcattta 317  Q
    ||||||||||||| ||||||||||||||||| ||||||| |||||    
T  18490661 tcatttatgtatatgtattttgtggactttatactgagttattta 18490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 26053186 - 26053130
Alignment:
Q  327 atatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||  |||| |||||| ||| ||||||||||| ||||||||    
T  26053186 atatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttac 26053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 383
Target Start/End: Complemental strand, 26073239 - 26073183
Alignment:
Q  327 atatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||||  |||| |||||| ||| ||||||||||| ||||||||    
T  26073239 atatcgattctacaaaagtcattgagtaaaatcattcgattttgattgggattttac 26073183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 30912304 - 30912240
Alignment:
Q  319 gattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||||||||| ||||||||||||||||||||||  ||  |||||| ||| ||||||||    
T  30912304 gatttcttatatcgattttacaaaagtagttgaataaaatccttcaattttggttgagattttac 30912240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 15528001 - 15527946
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttt 381  Q
    ||||||||||||||||||||  |||| ||||||  || ||||||||||||||||||    
T  15528001 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttt 15527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 31407401 - 31407447
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaac--tgagtcattta 317  Q
    |||||||||||||||||||||||||| |||||||  |||||||||||    
T  31407401 tcatttatgtataagtattttgtggaatttaaactttgagtcattta 31407447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 3573803 - 3573734
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||| ||||||||| ||||||||| |||| |  |  ||||||||||||||||||||    
T  3573803 tttacaatttcttatatctattctacaagagtagttgagtaaattcctacgattttgattgcgattttac 3573734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 7223753 - 7223810
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||  || |||||||||||| |||||||    
T  7223753 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcaattttac 7223810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 7918241 - 7918184
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| ||||||||||||||  |||| ||||||| || |||||||||||| |||||||    
T  7918241 tatattgattctacaaaagtccttgagtaaaattcttcgattttgattgcaattttac 7918184  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 383
Target Start/End: Complemental strand, 22498331 - 22498274
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||  |||| ||||||  ||  |||||||||||||||||||    
T  22498331 tatatcgattctacaaaagtctttgagtaaaatcgttcaattttgattgcgattttac 22498274  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 23898037 - 23898105
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||||||||||| ||||||||||| ||||||  || ||||||| || |||||||||    
T  23898037 tttacaatttcttatatcgattctac-aaagtagttgagtaaaatccttcgattttggtttcgattttac 23898105  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 306
Target Start/End: Original strand, 28669422 - 28669455
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaac 306  Q
    |||||||||||||||||||||||||| |||||||    
T  28669422 tcatttatgtataagtattttgtggaatttaaac 28669455  T

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Target: scaffold0150 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 33175 - 33233
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||||  ||| ||||||| || ||||||||||||||||||||    
T  33175 ttatatcgattctacaaaagtaagtgagtaaaattcttcgattttgattgcgattttac 33233  T

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Target: scaffold0534 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 896 - 965
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| |||||||  |||||||||||||||||| ||||||| || |||||||||||| |||||||    
T  896 tttacaatttcttatatctgttctacaaaagtagttgagtaaaattcttcgattttgattgcaattttac 965  T

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Target: scaffold0115 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 35011 - 34962
Alignment:
Q  273 tcatttatgtataagtattttgtggactttaaactgagtcatttacgatt 322  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| ||||    
T  35011 tcatttatgtataaatattttgtggactttaaactgagccatttatgatt 34962  T

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Target: scaffold0079 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 14814 - 14760
Alignment:
Q  329 atcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    |||||||||||||||||  |||||||||||  || ||||||||||||||||||||    
T  14814 atcgattctacaaaagtctttgaataaaatccttcgattttgattgcgattttac 14760  T

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Target: scaffold0603 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 8851 - 8794
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||| ||||||||||||||||||| ||||||  || |||||||||| ||||||||    
T  8851 ttatatctattctacaaaagtagttgagtaaaatccttcgattttgattacgatttta 8794  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 56316 - 56260
Alignment:
Q  326 tatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgatttta 382  Q
    ||||||||||||||||||||  |||| ||||||  || |||||||||||||||||||    
T  56316 tatatcgattctacaaaagtccttgagtaaaatccttcgattttgattgcgatttta 56260  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 145825 - 145883
Alignment:
Q  325 ttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||||||||||||||||||||  ||| ||||||  || |||||||||||| |||||||    
T  145825 ttatatcgattctacaaaagtaagtgagtaaaatccttcgattttgattgctattttac 145883  T

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Target: scaffold0510 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 383
Target Start/End: Complemental strand, 106 - 38
Alignment:
Q  314 tttacgattttttatatcgattctacaaaagtagttgaataaaattatttgattttgattgcgattttac 383  Q
    ||||| |||| ||||||||||||||| ||||||||||| ||||||  || ||||||| || |||||||||    
T  106 tttacaatttcttatatcgattctac-aaagtagttgagtaaaatccttcgattttggtttcgattttac 38  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 37103 - 37067
Alignment:
Q  281 gtataagtattttgtggactttaaactgagtcattta 317  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  37103 gtataagtattttgtgtactttaaacggagtcattta 37067  T

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