View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5740-Insertion-2 (Length: 738)

Name: NF5740-Insertion-2
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5740-Insertion-2
NF5740-Insertion-2
[»] chr1 (19 HSPs)
chr1 (7-637)||(51453870-51454480)
chr1 (11-347)||(51478322-51478658)
chr1 (640-719)||(44112679-44112758)
chr1 (640-719)||(45427764-45427843)
chr1 (640-719)||(41065155-41065234)
chr1 (640-719)||(48119630-48119709)
chr1 (30-143)||(51474326-51474439)
chr1 (640-719)||(35000132-35000211)
chr1 (640-719)||(35003296-35003375)
chr1 (640-719)||(38113214-38113293)
chr1 (640-695)||(14427349-14427404)
chr1 (640-719)||(38335920-38335999)
chr1 (640-719)||(45705827-45705906)
chr1 (640-719)||(26585464-26585543)
chr1 (640-719)||(45639751-45639830)
chr1 (640-719)||(46168385-46168464)
chr1 (640-719)||(43571105-43571184)
chr1 (640-719)||(48498981-48499060)
chr1 (638-719)||(2497581-2497662)
[»] chr8 (12 HSPs)
chr8 (640-719)||(34304790-34304869)
chr8 (640-719)||(35181518-35181597)
chr8 (638-719)||(33630012-33630093)
chr8 (640-719)||(18066737-18066816)
chr8 (637-719)||(30912581-30912663)
chr8 (638-719)||(29800969-29801050)
chr8 (640-719)||(16603645-16603724)
chr8 (640-719)||(42197454-42197533)
chr8 (638-719)||(20148760-20148841)
chr8 (638-719)||(42295195-42295276)
chr8 (638-719)||(26125635-26125716)
chr8 (638-719)||(42699257-42699338)
[»] chr2 (14 HSPs)
chr2 (637-719)||(11825673-11825755)
chr2 (640-719)||(43114559-43114638)
chr2 (629-719)||(41281993-41282083)
chr2 (638-719)||(6518488-6518568)
chr2 (640-719)||(12415479-12415558)
chr2 (640-719)||(12427539-12427618)
chr2 (640-719)||(16803970-16804049)
chr2 (640-719)||(16843252-16843331)
chr2 (640-719)||(18491707-18491786)
chr2 (644-719)||(34895760-34895835)
chr2 (638-719)||(4299439-4299520)
chr2 (640-719)||(966853-966932)
chr2 (640-719)||(43335782-43335861)
chr2 (638-719)||(43490420-43490501)
[»] chr6 (13 HSPs)
chr6 (7-192)||(18078871-18079056)
chr6 (31-347)||(18076829-18077127)
chr6 (226-344)||(18078747-18078865)
chr6 (640-719)||(33253915-33253994)
chr6 (640-719)||(33242405-33242484)
chr6 (638-719)||(24204006-24204087)
chr6 (638-719)||(27441542-27441623)
chr6 (640-719)||(7367551-7367630)
chr6 (640-719)||(13743240-13743319)
chr6 (640-719)||(13748740-13748819)
chr6 (640-719)||(26670028-26670107)
chr6 (638-719)||(30735982-30736063)
chr6 (640-719)||(7273354-7273433)
[»] chr3 (12 HSPs)
chr3 (640-719)||(9434126-9434205)
chr3 (640-719)||(34791831-34791910)
chr3 (640-719)||(51757595-51757674)
chr3 (640-719)||(4190284-4190363)
chr3 (640-719)||(10457911-10457990)
chr3 (640-719)||(52627996-52628075)
chr3 (640-719)||(25996270-25996349)
chr3 (640-719)||(40808867-40808946)
chr3 (637-719)||(27748562-27748644)
chr3 (640-719)||(25413683-25413762)
chr3 (640-719)||(42100690-42100769)
chr3 (640-719)||(45126947-45127026)
[»] chr7 (14 HSPs)
chr7 (640-719)||(40236921-40237000)
chr7 (640-719)||(33384872-33384952)
chr7 (640-719)||(27535250-27535329)
chr7 (638-719)||(43343643-43343724)
chr7 (638-719)||(44416953-44417034)
chr7 (640-716)||(31408655-31408731)
chr7 (640-719)||(31513289-31513368)
chr7 (638-719)||(4638218-4638299)
chr7 (638-719)||(10573749-10573830)
chr7 (641-718)||(26898422-26898499)
chr7 (638-719)||(44326178-44326259)
chr7 (640-719)||(5015397-5015476)
chr7 (640-719)||(35069723-35069802)
chr7 (640-705)||(39998410-39998475)
[»] chr5 (12 HSPs)
chr5 (10-90)||(43159816-43159896)
chr5 (640-719)||(32473413-32473492)
chr5 (270-364)||(42431626-42431718)
chr5 (270-347)||(42433365-42433442)
chr5 (640-719)||(17208076-17208155)
chr5 (638-719)||(5256995-5257076)
chr5 (640-719)||(7617135-7617214)
chr5 (640-719)||(22512307-22512386)
chr5 (640-719)||(30622738-30622816)
chr5 (640-719)||(33801471-33801550)
chr5 (640-710)||(33855071-33855141)
chr5 (44-97)||(43159692-43159745)
[»] chr4 (17 HSPs)
chr4 (640-719)||(32728359-32728438)
chr4 (640-719)||(55272395-55272474)
chr4 (640-719)||(17619171-17619250)
chr4 (644-719)||(48435598-48435673)
chr4 (640-718)||(960890-960968)
chr4 (640-718)||(49229684-49229762)
chr4 (640-719)||(711962-712041)
chr4 (638-719)||(3756265-3756346)
chr4 (638-719)||(27893861-27893942)
chr4 (638-719)||(35037005-35037086)
chr4 (638-719)||(38851513-38851594)
chr4 (638-719)||(43514705-43514786)
chr4 (640-719)||(27864566-27864645)
chr4 (640-719)||(28988475-28988554)
chr4 (640-719)||(46827725-46827804)
chr4 (640-718)||(27550311-27550389)
chr4 (638-719)||(41327562-41327643)
[»] scaffold0100 (1 HSPs)
scaffold0100 (640-719)||(35475-35554)
[»] scaffold0003 (1 HSPs)
scaffold0003 (638-719)||(45738-45819)
[»] scaffold0119 (1 HSPs)
scaffold0119 (640-719)||(687-766)


Alignment Details
Target: chr1 (Bit Score: 535; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 7 - 637
Target Start/End: Complemental strand, 51454480 - 51453870
Alignment:
Q  7 accttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454480 accttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacg 51454381  T
Q  107 tcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454380 tcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacat 51454281  T
Q  207 tggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactgt 306  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51454280 tggcagtaggttgtgtttcttgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgt 51454181  T
Q  307 gtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtttttcagggatttgattaattagtttaacatagaatagaggat 406  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51454180 gtggttgttctcttcctccgccattgaaatttcgaatgcagagaatggagtttttgtttttcagggatttgattaattagtttaacatagaatagaggat 51454081  T
Q  407 gaaaatggcgaggtgaaggaacccctagctatggagcatgcattgcatttgggtttgtttacttctactgctactgctgaaaatggcgaggtggagaaac 506  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51454080 gaaaatggcgaggtgaaggaa-ccctagctatggagcatgcattgcatttgggtttgtttacttctactgctactgctgaaaatggcgaggtggagaaaa 51453982  T
Q  507 ctgaacgttgagaatgtttgttacttgtattaggcatcgcatcagcgtggtatagtgtaaggagtgggggtccagtaaaaccgattctaaaatagcaata 606  Q
    |||||||||||||||||||||||||||||||||||||||||||                ||||||  ||||||| |||||||||||||||||||||||||    
T  51453981 ctgaacgttgagaatgtttgttacttgtattaggcatcgcatc----------------aggagt--gggtcca-taaaaccgattctaaaatagcaata 51453901  T
Q  607 agtcataacttgctcattaaggttttttccg 637  Q
    |||||||||||||||||||||||||||||||    
T  51453900 agtcataacttgctcattaaggttttttccg 51453870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 11 - 347
Target Start/End: Complemental strand, 51478658 - 51478322
Alignment:
Q  11 tcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcat 110  Q
    ||||||||| || ||| | |||||||||||||||  ||||||| |||| |||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  51478658 tcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgttttcctcgatcaggaacagattcttcagctacttccaccacgtcat 51478559  T
Q  111 cacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacattggc 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  51478558 cacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagcttgtgccacatcaccatcctccaacggtaccatttccgcgccaacattggc 51478459  T
Q  211 agtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactgtgtgg 310  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||  || |||| ||||||| |||||||||||||||||||||| |||||| |||      
T  51478458 agtgggttgtgtttctcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgactatgtca 51478359  T
Q  311 ttgttctcttcctccgccattgaaatttcaaatgcag 347  Q
    |||||||||||||| ||||||||||||||||||||||    
T  51478358 ttgttctcttcctcagccattgaaatttcaaatgcag 51478322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 44112679 - 44112758
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  44112679 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctc 44112758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 45427843 - 45427764
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||| | | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  45427843 aaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctc 45427764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 41065155 - 41065234
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||  |||||||||||| ||||||||||||||||||||    
T  41065155 aaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctc 41065234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 48119630 - 48119709
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctc 48119709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 51474439 - 51474326
Alignment:
Q  30 acaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaa 129  Q
    ||||||| | |||||||||||||| ||| | |||||||||||||||||||| | |||||||||||||| |  |||| ||||||| |||| | || |||||    
T  51474439 acaccactgctttggcgccaacatccatagtttgtttttctcgatcaggaacatattcttcagctgctgctgccacatcatcaccttcaccgtcattcaa 51474340  T
Q  130 cgacgccgtttcag 143  Q
    |||| | |||||||    
T  51474339 cgacactgtttcag 51474326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 35000211 - 35000132
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||| || ||||| ||||||||||||||| ||| || |||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctc 35000132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 35003296 - 35003375
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||| ||||| ||| |||||||||| ||||||||    
T  35003296 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctc 35003375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 38113293 - 38113214
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||  ||||||||||||| ||||||||    
T  38113293 aaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctc 38113214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 695
Target Start/End: Original strand, 14427349 - 14427404
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcatta 695  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 38335920 - 38335999
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||||||||||||  |||||||||   ||||||||| ||| |||||||||| ||||||||    
T  38335920 aaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctc 38335999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 45705827 - 45705906
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||| ||||||| | ||||||||||||  |||||||||||  ||||||||| |||||||||| ||| ||||||||    
T  45705827 aaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctc 45705906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 26585464 - 26585543
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||| ||||||||  |||||||||||||  ||||||||||  ||||||||| ||| ||||| |||| ||||||||    
T  26585464 aaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 45639830 - 45639751
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||   ||||||||||||  |||||||||||  ||| ||||| ||| |||||||||| ||||||||    
T  45639830 aaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctc 45639751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 46168385 - 46168464
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||||||||| |  |||||||||||   |||||||| ||| |||||||||| ||||||||    
T  46168385 aaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctc 46168464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 43571184 - 43571105
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| ||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctc 43571105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 48499060 - 48498981
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| ||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctc 48498981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 2497662 - 2497581
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||  |||| ||| |||||||||| ||||||||    
T  2497662 gaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctc 2497581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 34304790 - 34304869
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  34304790 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctc 34304869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 35181518 - 35181597
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctc 35181597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 33630093 - 33630012
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||| ||||| | |||||||||||||   |||||||||   |||||||||||||||||| |||||||||||||    
T  33630093 gaaaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctc 33630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 18066816 - 18066737
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||  ||||||||||   |||| |||||||| ||||| |||||||||||||    
T  18066816 aaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctc 18066737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 637 - 719
Target Start/End: Complemental strand, 30912663 - 30912581
Alignment:
Q  637 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||| | |||| || ||||| | ||||||||| ||||| |||||||  |||||||||| ||||||||    
T  30912663 ggaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctc 30912581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 29801050 - 29800969
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  29801050 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctc 29800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 16603724 - 16603645
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||| ||| | |||||||||||||  |||| |||||  |||||||||  ||||||||||||| ||||||||    
T  16603724 aaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctc 16603645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 42197533 - 42197454
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| |||||| || ||||| | |||| |||||  ||| |||||||| |||||||||| ||||||||    
T  42197533 aaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctc 42197454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 20148760 - 20148841
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| | |||| |||||||  | ||||||||| ||||  |||||||| |||||||||| ||||||||    
T  20148760 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctc 20148841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 42295195 - 42295276
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| ||||||||    
T  42295195 gaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctc 42295276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 26125635 - 26125716
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| | |||| |||||||  | |||||||||   ||| |||||||| |||||||||| ||||||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctc 26125716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 42699257 - 42699338
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | |||| || ||||| | ||||||||| | ||| |||| ||| ||||| |||| ||||||||    
T  42699257 gaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctc 42699338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 637 - 719
Target Start/End: Complemental strand, 11825755 - 11825673
Alignment:
Q  637 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  11825755 ggaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctc 11825673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 43114559 - 43114638
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctc 43114638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 629 - 719
Target Start/End: Complemental strand, 41282083 - 41281993
Alignment:
Q  629 ttttttccggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||  ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||    
T  41282083 ttttttcttgaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctc 41281993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 6518568 - 6518488
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  6518568 gaaaaatgttacatgaacacc-tttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctc 6518488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 12415558 - 12415479
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||| |||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctc 12415479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 12427618 - 12427539
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||||||||||||||||| |||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctc 12427539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 16803970 - 16804049
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||    
T  16803970 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctc 16804049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 16843252 - 16843331
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||    
T  16843252 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctc 16843331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 18491707 - 18491786
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||||||| | |||||||||||| ||||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctc 18491786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 644 - 719
Target Start/End: Complemental strand, 34895835 - 34895760
Alignment:
Q  644 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| ||||||||    
T  34895835 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctc 34895760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 4299520 - 4299439
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||| ||||||| | ||||||||||||| |||||||||||  |||||||||  ||||||||||||| ||||||||    
T  4299520 gaaaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctc 4299439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 966932 - 966853
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| | || ||||||||| ||||||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctc 966853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 43335861 - 43335782
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||| |||||||||||||| || |||||   ||||||||   |||| |||||||| |||||||||| ||||||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctc 43335782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 43490501 - 43490420
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | |||| || ||||  | |||||||||   ||| |||||||| |||||||||| ||||||||    
T  43490501 gaaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctc 43490420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 18079056 - 18078871
Alignment:
Q  7 accttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacg 106  Q
    ||||||||||||| || ||| |  || |||| ||||||||||||  | ||| |||||||||||||||||||||  | |||||||| ||||| |  |||||    
T  18079056 accttcatcgtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgtttttctcgatcaggagcaaattcttcaactgctgctgccacg 18078957  T
Q  107 tcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgt 192  Q
    || |||| |||| | || |||||||| ||| ||| ||| |||||||||| |||| ||||||||||| || ||||||||||||||||    
T  18078956 tcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtaccgt 18078871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 347
Target Start/End: Complemental strand, 18077127 - 18076829
Alignment:
Q  31 caccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaac 130  Q
    |||||| || ||||||||||||| ||| | ||||||||||||| |||||| ||||||  |||||||| || |||| ||||||| |||| | || ||||||    
T  18077127 caccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaac 18077028  T
Q  131 gacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgat 230  Q
    ||||| | |||||  | |||| ||| ||| ||||||| |||| |  ||||  ||||||||||||  |||||||||||   |||||| |||||||||||      
T  18077027 gacgctgattcagaactaacatcgatagcatgtgccaagtcatctccctctgacggtaccgtttgggcgccaacattcaaagtaggctgtgtttctcg-- 18076930  T
Q  231 gatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccat 330  Q
     |||||  ||     |||||        ||  ||||  |||||||||||||||||||||||||||||||||||| |||||| |||||||||  |||||||    
T  18076929 -atcatcctc-----tgggt--------at--gggaccgtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccat 18076846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 226 - 344
Target Start/End: Complemental strand, 18078865 - 18078747
Alignment:
Q  226 tcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctcc 325  Q
    ||||||||||||||||||||||||||| |||   || ||||  |||||| ||||||||||||| ||| ||||||||||| ||  | ||||||| ||||||    
T  18078865 tcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttactgtatatgtgactatgacgctgttctcgtcctcc 18078766  T
Q  326 gccattgaaatttcaaatg 344  Q
    |||||||||||||||||||    
T  18078765 gccattgaaatttcaaatg 18078747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 33253915 - 33253994
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| ||||||||    
T  33253915 aaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctc 33253994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 33242405 - 33242484
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| |||||||||||||||  ||||||||||  |||| |||| |||||||||||||| ||||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctc 33242484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 24204087 - 24204006
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||||  |||| |||||||| |||||||||| ||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctc 24204006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 27441542 - 27441623
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    ||| |||| ||| |||||||||| ||||||||    
T  27441542 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctc 27441623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 7367551 - 7367630
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||| |||||||||||||| ||||||||   ||||||||   |||| |||||||| |||||||||| ||||||||    
T  7367551 aaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctc 7367630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 13743319 - 13743240
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctc 13743240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 13748819 - 13748740
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctc 13748740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 26670107 - 26670028
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || |||||   ||||||||| ||||| |||||||| |||||||||| ||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctc 26670028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 30735982 - 30736063
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||   |||| || ||||| | ||||||||| ||||| ||||| || |||||||||| ||||||||    
T  30735982 gaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctc 30736063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 7273433 - 7273354
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || |||||  ||||||||||  |||| ||||| || |||||||||| ||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctc 7273354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 9434126 - 9434205
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  9434126 aaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctc 9434205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 34791831 - 34791910
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||||||||||||  ||||||| || ||||||||||||||||||||  ||||||||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctc 34791910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 51757595 - 51757674
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||| |||||| |||| | ||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  51757595 aaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctc 51757674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 4190363 - 4190284
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| | ||| ||||| || |||||||||| ||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctc 4190284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 10457990 - 10457911
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| || |||||    
T  10457990 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctc 10457911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 52628075 - 52627996
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||| |||||| | ||||||||||||  ||||||||||| |||||||||| | | |||||||||| ||||||||    
T  52628075 aaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctc 52627996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 25996270 - 25996349
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||   ||||||||||  |||  |||| |||||||||||||| ||||||||    
T  25996270 aaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctc 25996349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 40808867 - 40808946
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||| |||| |||||| || ||||| | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctc 40808946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 637 - 719
Target Start/End: Original strand, 27748562 - 27748644
Alignment:
Q  637 ggaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||| | |||| ||||||||   ||| ||||| | ||| |||||||| |||||||||| ||||||||    
T  27748562 ggaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctc 27748644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 25413683 - 25413762
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || ||||| | ||||||||| | ||| |||||||| ||||| |||| ||||||||    
T  25413683 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctc 25413762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 42100690 - 42100769
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || |||||   |||||||||  |||| |||||||| |||||||||| ||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctc 42100769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 45127026 - 45126947
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||| |||| | |||| |||||||  | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctc 45126947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 8e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 40236921 - 40237000
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||  |||||||||||  |||||||||||||||||||||||||||||||||    
T  40236921 aaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctc 40237000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 33384872 - 33384952
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcataca-cactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||||||||||||||| | |||||||| ||  |||||||||||||||||||||||| ||||||||    
T  33384872 aaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctc 33384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 27535329 - 27535250
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||  |||  ||||||||||||||||||||||    
T  27535329 aaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctc 27535250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 43343724 - 43343643
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||  |||| |||||||| |||||| ||| ||||||||    
T  43343724 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctc 43343643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 44417034 - 44416953
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||||||||||| |  ||||| |||||||||||  |||| |||||||| |||||| ||| ||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctc 44416953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 716
Target Start/End: Complemental strand, 31408731 - 31408655
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcat 716  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||   ||||||||| ||| |||||||||| |||||    
T  31408731 aaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcat 31408655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 31513289 - 31513368
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||   ||||||||||||| |||||||| ||  ||||||||| ||| |||||||||| ||||||||    
T  31513289 aaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctc 31513368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 4638299 - 4638218
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | |||| |||||||| | |||||||||  |||  |||| ||| |||||||||| ||||||||    
T  4638299 gaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctc 4638218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 10573749 - 10573830
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| | |||| |||||||  |||||||||||  |||| |||||| | |||||||||| ||||||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctc 10573830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 718
Target Start/End: Complemental strand, 26898499 - 26898422
Alignment:
Q  641 aaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 718  Q
    |||||||||||||||| | |||| |||||||| | ||||||||   |||| |||||||| |||||||||| |||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 44326178 - 44326259
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| | |||| |||||||  | ||||||||| ||||  |||||||| |||||||||| ||||||||    
T  44326178 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctc 44326259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 5015397 - 5015476
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||   |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| ||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctc 5015476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 35069723 - 35069802
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||||   |||| || |||||   ||||||||| ||||| |||||||| |||||||||| ||||||||    
T  35069723 aaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctc 35069802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 705
Target Start/End: Original strand, 39998410 - 39998475
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacatttt 705  Q
    |||||||||||||||||   ||||||||||||  |||||||||||  |||| |||||||| |||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 43159896 - 43159816
Alignment:
Q  10 ttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttc 90  Q
    |||||||||| |||||||| || ||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  43159896 ttcatcgtccgtcaacagcaactccaccgtattggcgccaacattcatagcttgtttttcttgatcaggaacagattcttc 43159816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 32473492 - 32473413
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||  ||||||||||||| |||||||||||||||||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctc 32473413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 270 - 364
Target Start/End: Original strand, 42431626 - 42431718
Alignment:
Q  270 tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcagagaatggagtttttgtt 364  Q
    |||||||||||||||||||||| ||||||||| |  ||| |||||||||||||||||||||||||||||| |||| || |||  |||||||||||    
T  42431626 tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattgaaatttctaatgtagggaa--gagtttttgtt 42431718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 42433442 - 42433365
Alignment:
Q  270 tgagtgtgactttgattttcactatatatgtgactgtgtggttgttctcttcctccgccattgaaatttcaaatgcag 347  Q
    |||| ||||||||||||| ||| | |||||||||  ||| ||||||||||||||||||||||||||||||||||||||    
T  42433442 tgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattgaaatttcaaatgcag 42433365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 17208076 - 17208155
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||| |||||| | |||||||||||||  ||||||||||  ||||||||| |||||||||||||| ||||||||    
T  17208076 aaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctc 17208155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 5256995 - 5257076
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||||||||||||    
T  5256995 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctc 5257076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 7617135 - 7617214
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| |||||||| | ||| |||||  |||| |||||||| |||||||||| ||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctc 7617214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 22512307 - 22512386
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctc 22512386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 30622816 - 30622738
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| ||||||||||||| |||||||| |   ||||||||| ||| |||||||||| || |||||    
T  30622816 aaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctc 30622738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 33801471 - 33801550
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| |||| |  ||||| | |||||||||  |||| |||||||| ||||| |||| ||||||||    
T  33801471 aaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctc 33801550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 640 - 710
Target Start/End: Complemental strand, 33855141 - 33855071
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaa 710  Q
    ||||||||||||||||| | |||| || ||||| | |||||||||  |||| |||||| ||||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 43159745 - 43159692
Alignment:
Q  44 gcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgct 97  Q
    |||||||||||||| |||||||| ||| ||||||||| ||| ||||| ||||||    
T  43159745 gcgccaacattcatagcttgtttatcttgatcaggaacagactcttctgctgct 43159692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 32728359 - 32728438
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||| ||||||||| |||| ||||||||    
T  32728359 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctc 32728438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 55272474 - 55272395
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||    
T  55272474 aaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctc 55272395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 17619250 - 17619171
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||    
T  17619250 aaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctc 17619171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 644 - 719
Target Start/End: Complemental strand, 48435673 - 48435598
Alignment:
Q  644 tgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||| |||||||||| |||| |||||||||||  |||||||||||||||| ||||||| ||||||||    
T  48435673 tgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctc 48435598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 640 - 718
Target Start/End: Complemental strand, 960968 - 960890
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 718  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   || |||||||||||||||||||| |||||||    
T  960968 aaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 640 - 718
Target Start/End: Complemental strand, 49229762 - 49229684
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 718  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||| ||| ||| |||||| |||||||    
T  49229762 aaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 711962 - 712041
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   |||||||| ||| |||||||||| ||||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctc 712041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 3756346 - 3756265
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | ||||||||||||| |||||||||||  ||||||||| ||| ||||| |||| || |||||    
T  3756346 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctc 3756265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 27893942 - 27893861
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||||||||||||    
T  27893942 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctc 27893861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 35037005 - 35037086
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||||||| || | ||||| ||||||| |||||||||||  ||||||||| ||| |||||||||| ||||||||    
T  35037005 gaaaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctc 35037086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 638 - 719
Target Start/End: Original strand, 38851513 - 38851594
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| ||| ||||||||||||   || |||||||  ||||||||| |||||||||| ||| ||||||||    
T  38851513 gaaaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctc 38851594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 43514786 - 43514705
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | |||| || ||||| | ||||||||| ||||| |||||||  |||||||||| ||||||||    
T  43514786 gaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctc 43514705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 27864566 - 27864645
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||| |||| |||||| |||||||  | |||||||||  |||| |||||||| |||||||||| ||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctc 27864645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 28988475 - 28988554
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| ||||||||   |||||||||  |||||| ||||||||||||| ||| ||||||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctc 28988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 46827804 - 46827725
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||   |||||||| | || ||||||||| || |||||    
T  46827804 aaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctc 46827725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 718
Target Start/End: Original strand, 27550311 - 27550389
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatct 718  Q
    ||||||||||||||||| | |||| |  ||||| | ||||||||| ||||| |||||||| |||||||||| |||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 41327643 - 41327562
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||  ||| | |||| ||| |||| | ||||||||| | ||||| || |||||||||||||| ||||||||    
T  41327643 gaaaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctc 41327562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 719
Target Start/End: Complemental strand, 35554 - 35475
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    |||||||||||| |||| |||||||||||||||  ||||||||||  |||||||||||||||| ||||||| ||||||||    
T  35554 aaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctc 35475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 638 - 719
Target Start/End: Complemental strand, 45819 - 45738
Alignment:
Q  638 gaaaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||    ||| |||| ||| |||||||||| ||||||||    
T  45819 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctc 45738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 640 - 719
Target Start/End: Original strand, 687 - 766
Alignment:
Q  640 aaaatgttacatgaacatcatttaatcatacacactattgtacacatcatgcattagggacattttggtaatttcatctc 719  Q
    ||||||||||||||||| | |||| || |||||   ||||||||| ||||| |||||||| |||||||||| ||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctc 766  T

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