View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740-Insertion-3 (Length: 575)
Name: NF5740-Insertion-3
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 41308384 - 41308951
Alignment:
| Q |
8 |
gttttattgggggtgt-ggaagaaaacaccacgttctttgcatgcaacaaacactagtgaaagtgtgattagagagaaagaaggtacaaatcaaggacat |
106 |
Q |
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| T |
41308384 |
gttttattgggggtgttggaagaaaacaccatgttctttgcatgcaacaaacactagtgaaagtgtgattagagagaaagaaggtacaaatcaagaacat |
41308483 |
T |
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| Q |
107 |
gatttggaattaggtgttgatggaaaagatttgcttttgaaatccaatggtgaagaaagtttggaagtggaattgatgaggttgcataatctccctggtc |
206 |
Q |
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| T |
41308484 |
gatttggaattaggtgttgatggaaaagatttgcttttgaaatccaatggtgaagaaagtttggaagtagaattgatgaggttgcataatctccctggtc |
41308583 |
T |
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| Q |
207 |
caccaaggtttttgttcacaatcacagaagaaacaaaagaagatttggaatctgaaggtggtagatcaaggtgtggtagaagcagaaaagggtctagaac |
306 |
Q |
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| T |
41308584 |
caccaaggtttttgttcacaatcacagaagaaacaaaagaagatttggaatctgaagatggtagatcaaggtgtggtagaagcagaaaagggtctagaac |
41308683 |
T |
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| Q |
307 |
aaagagtttaagtgattttattgattctcctatgaagtgctctttagaccctcttgaatcttataagcatcaagggttcaatcctctatttgaagtctca |
406 |
Q |
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| T |
41308684 |
aaagagtttaagtgattttattgattctcctatgaagtgttctttagaccctcttgaatcttataagcatcaagggttcaatcctctctttgaagtctca |
41308783 |
T |
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| Q |
407 |
gcagaatctgaattcaacaggtttagatcttctccaccaccaaagttcaagtttctaaggggatgcagaggagaaattgtatagaagattgatggaggaa |
506 |
Q |
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| T |
41308784 |
gcagaatctgaattcaacaggtttagatcttctccaccaccaaagttcaagtttctaa-gggatgcagaggagaaattgtatagaagattgatggaggaa |
41308882 |
T |
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| Q |
507 |
tctagaagaaaagcactagaggaaaatcatggttctgtttcagaatttgaggttaaaaattcacttaat |
575 |
Q |
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| T |
41308883 |
tctaaaagaaaagcactagaggaaaatcatggttctgtttcagaatttgaggttaaaaattcacttaat |
41308951 |
T |
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