View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5740-Insertion-4 (Length: 420)
Name: NF5740-Insertion-4
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740-Insertion-4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 40577902 - 40578272
Alignment:
| Q |
8 |
tctctttctcatcaatttgtttctcttcttctgaaggtggttttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40577902 |
tctctttctcatcaatttgtttctcttcttctgaaggtggttttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaag |
40578001 |
T |
|
| Q |
108 |
aaccttcaatggatccgctatttctcctttaacaataaccttgtgagatttgcaatcagtaaccacatcttcaacgcctgaaaaatccatcacaaattat |
207 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40578002 |
aaccttcaatggatccgctttttctcctttaacaataaccttgtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatccatcacaaattat |
40578101 |
T |
|
| Q |
208 |
taatcattaacacaaaaatatc----agacnnnnnnnnnnggtaaataaaagcaaaactttttacctggaaaacctttgagtgaacgacgaactttacga |
303 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40578102 |
taatcattaacacaaaaatatcggaaagaaaaaaaaaaaaggtaaataaaagcaaaactctttacctggaaaacctttgagtgaacgacgaactttacga |
40578201 |
T |
|
| Q |
304 |
gcacaaccttcacaatgcatgaagactttaagcacaatttctggcggtgtaacttccttagattcctccgg |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40578202 |
gcacaaccttcacaatgcatgaagactttaagcacaatttctcgcggtgtaacttccttagattcctccgg |
40578272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 45390895 - 45391039
Alignment:
| Q |
50 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctatttctcctttaacaataacctt |
149 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||| | |||||||||||| |||||| | |||||||| |||| ||| | |
|
|
| T |
45390895 |
ttgggatcggagaaagaagctcaacctttctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttctctcctttcacaaccaccgt |
45390994 |
T |
|
| Q |
150 |
gtgagatttgcaatcagtaaccacatcttcaacgcctgaaaaatc |
194 |
Q |
| |
|
||||| ||||||||||| | ||| |||||||| |||| |||||| |
|
|
| T |
45390995 |
atgagacttgcaatcagttatcacttcttcaacacctggaaaatc |
45391039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 45386526 - 45386670
Alignment:
| Q |
50 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctatttctcctttaacaataacctt |
149 |
Q |
| |
|
||||||||||||||||||||||||| | || ||||||||| ||||||| || || | |||||||||||| || ||| | |||||||| |||| ||| | |
|
|
| T |
45386526 |
ttgggatcggagaaagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctctgctttctctcctttcacaaccaccat |
45386625 |
T |
|
| Q |
150 |
gtgagatttgcaatcagtaaccacatcttcaacgcctgaaaaatc |
194 |
Q |
| |
|
||||||||||||||||| | ||| |||||||| |||| |||||| |
|
|
| T |
45386626 |
atgagatttgcaatcagttatcacttcttcaacacctggaaaatc |
45386670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 45386659 - 45386718
Alignment:
| Q |
267 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaa |
326 |
Q |
| |
|
|||||||||| |||| | ||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
45386659 |
acctggaaaatctttcaatgaccgacgaactttccgagcacagccttcacaatgcatgaa |
45386718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 45391028 - 45391107
Alignment:
| Q |
267 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagcacaatttctg |
346 |
Q |
| |
|
|||||||||| |||| | || ||||||||||| |||||||| | ||||||||||||||| ||||| |||| ||| |||| |
|
|
| T |
45391028 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctg |
45391107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 734503 - 734647
Alignment:
| Q |
50 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctatttctcctttaacaataacctt |
149 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| ||||||| ||||| | |||||||||||| |||||| | |||||||| |||| ||| | |
|
|
| T |
734503 |
ttgggatcggagaaagaagctcaaccttcctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttctctcctttcacaaccaccgt |
734602 |
T |
|
| Q |
150 |
gtgagatttgcaatcagtaaccacatcttcaacgcctgaaaaatc |
194 |
Q |
| |
|
||||| |||||||||| | ||| |||||||| |||| |||||| |
|
|
| T |
734603 |
atgagacttgcaatcagctatcacttcttcaacacctggaaaatc |
734647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 734636 - 734715
Alignment:
| Q |
267 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagcacaatttctg |
346 |
Q |
| |
|
|||||||||| |||| | || ||||||||||| |||||||| | ||||||||||||||| ||||| |||| ||| |||| |
|
|
| T |
734636 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctg |
734715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University