View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740-Insertion-5 (Length: 321)
Name: NF5740-Insertion-5
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 43536962 - 43536648
Alignment:
| Q |
12 |
ataaggtggtttaactcagcacttgcttagc-----agtatatattgatatagtaaaggccccaccaagatctaccatgagcgattctgactcatttgag |
106 |
Q |
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| T |
43536962 |
ataaggtggtttaactcagcacttgcttagcgcagcagtatatattgatatagtaaaggccccaccaagatctaccatgagcgattctgactcatttgag |
43536863 |
T |
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| Q |
107 |
ctgaattgagaaatcagtggccaaacatgtaaacatgaaatctacaaggcccttttaagtgtgtgcttgtgctttctagtttaaattacatctatagaga |
206 |
Q |
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| T |
43536862 |
ctgaattgagaaatcagtggccaaacatgtaaacatgaaatctacaaggcccttttaagtgtgtgcttgtgctttctagtttacattacatctatagaga |
43536763 |
T |
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| Q |
207 |
attgacattttttatatctacatttgggttaaatgtaataaatgttggtttccaatcaatgctaggttaaatttgcagtatcgtcagaacttagttccat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43536762 |
attgacattttttatatctacatttgggttaaatgtaataaatgttggtttccaatcaatgctaggttaaatttgcagtatcgtcagaacttagttccat |
43536663 |
T |
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| Q |
307 |
ctattatcttatgta |
321 |
Q |
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| T |
43536662 |
ctattatcttatgta |
43536648 |
T |
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