View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_high_10 (Length: 421)
Name: NF5740_high_10
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 38309616 - 38309222
Alignment:
| Q |
10 |
attatacttgatttattgactgcaagaccactgaaggccaacttcagtgacagaaggcagnnnnnnnntgctaatccagtcaagcattgtgtatcgcgta |
109 |
Q |
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| T |
38309616 |
attatacttgattcattgactgcaagaccactgaaggccaacttcagtgacagaagccagaaaaaaaatgctaatccagtcaagcattgtgtatcgcgta |
38309517 |
T |
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| Q |
110 |
gaactgattttatcctcattgactgcagatggcaaggggaaaactaatacaactgaagcaagttataacgatgtgtttgaaagagggtatctaaatggac |
209 |
Q |
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| T |
38309516 |
gaactgattttatcctcattgactgcagatggcaaggggaaaactactacaactgaagcaagttataacgatgtgcttgaaagagggtatctaaatggac |
38309417 |
T |
|
| Q |
210 |
gtgatttctgatgattccttacaagttacaaactttgcttataagcaagcgcccattgattttctccatattcttggcactggtaccattagagttttcc |
309 |
Q |
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| T |
38309416 |
gtgatttctgatgattccttacaagttacaaactttgcttataagtaagcgcccattgattttctccatattcttggcactggtaccattagagttttcc |
38309317 |
T |
|
| Q |
310 |
acgtgcttaatattatcccccaaccccttttcaagtgatgctacttacaaaggcacttttgtattgatttggccgagttccagcctccaatcctg |
404 |
Q |
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| T |
38309316 |
acgtgcttaatattatcccccaaccccttttcaagtgatgctacttacaaaggcacttttgtattgatttggccgagttccagtctccaatcctg |
38309222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 111 - 404
Target Start/End: Original strand, 38128807 - 38129097
Alignment:
| Q |
111 |
aactgattttatcctcattgactgcagatggcaaggggaaaactaatacaactgaagcaagttataacgatgtgtttgaaagagggtatctaaatggacg |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||| ||||| ||||| |
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| T |
38128807 |
aactgattttatcgtcattgactgcagatggcaaggggaaaactgctacaactgaagcaagttataacaatgtgcttgaaagagggtttctaattggaca |
38128906 |
T |
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| Q |
211 |
tgatttctgatgattccttacaagttacaaactttgcttataagcaagcgcccattgattttctccatattcttggcactggtaccattagagttttcca |
310 |
Q |
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|||||||||||||||||||||||| |||||||||||| | |||| |||| ||| | | |||| ||||| |||||||| ||| |||||| |||||| || |
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| T |
38128907 |
tgatttctgatgattccttacaagatacaaactttgcctgtaagtaagccccc--ttaatttcaccataaccttggcaccggtgccattatagttttaca |
38129004 |
T |
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| Q |
311 |
cgtgcttaatattatcccccaacccct-tttcaagtgatgctacttacaaaggcacttttgtattgatttggccgagttccagcctccaatcctg |
404 |
Q |
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| T |
38129005 |
cgtac-taatattatccccgaacccctcttttaagtgatgctacttacaaaggtacctttgta-tgatttggccgagttccagtctccaatcctg |
38129097 |
T |
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