View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5740_high_2 (Length: 601)
Name: NF5740_high_2
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Original strand, 6412216 - 6412785
Alignment:
| Q |
19 |
ataggacagagtggaggaagagatttattgaagaaaatttcaatgttagggatgcttctagtattttgtcaataccgctttataaggtggtggatcaaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412216 |
ataggacagagtggaggaagagatttatt-aagaaaatttcaatgttagggatgcttctagtattttgtcaataccgctttataaggtggtggatcaaga |
6412314 |
T |
|
| Q |
119 |
agatatagcaagctcaaagtttagtcccaccgaatttacagtgtaaagtttggatattactacgctaaggaacagttgatagacaatagcgaatactgaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6412315 |
agatatagcaagctcaaagtttagtcccaccgaatttacagtgtaaagtttggatattactacgctaaggaacagttgatggacaatagcgaatactgaa |
6412414 |
T |
|
| Q |
219 |
aggaaaactatatgaaaaagctatggggcttgaaaaatgagtgtaatctacttgacaaagacttcaacatatatagagaggtacaatgcacagataaatg |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6412415 |
aggaaaactatgtgaaaaagctatggggcttgaaaaatgagtgtaatctacttgacaaagacttcaac----atagagaggtacaatgcacagataaatg |
6412510 |
T |
|
| Q |
319 |
tgtcttttgtgagt-------------aatgattgacatgtgtttctttggatgttggaaagcgcaagagacatggatggaagtgggtctttggatgatc |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6412511 |
tgtcttttgtgagtatctactgatgagaatgattgacatgtgtttctttgaatgtaggaaagcgcaagagacatggatggaagtgggtctttggatgatc |
6412610 |
T |
|
| Q |
406 |
ataaatggccgaatgcatagggcaaatggatttaattctctatttgtttttatctcacagaattgttgtcatctaatcaatcgaaaatatttgttagagc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |
|
|
| T |
6412611 |
ataaatggccgaatgcatagggcaaatggatttaattctctatttgtttttatctcacagaattgttgacatctaatcaatcgagcatatttgttatagc |
6412710 |
T |
|
| Q |
506 |
attatggtgcatttggaagaggaggattaagaagttatgtgaagaggttgatactcgcctagcgataactctacc |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6412711 |
attatggtgcatttggaagaggaggattaagaagttatatgaagaggttgatactcgcctggcgataactctacc |
6412785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 13382297 - 13382218
Alignment:
| Q |
68 |
ggatgcttctagtattttgtcaataccgctttataaggtggtggatcaagaagatatagcaagctcaaagtttagtcccaccg |
150 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||||||| | ||||||||||||||| ||| ||||| | |||||| |||| |
|
|
| T |
13382297 |
ggatgcctctaatattttatcaataccgctttataaggatg---atcaagaagatatagtaagttcaaaatctagtcctaccg |
13382218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University