View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5740_high_4 (Length: 541)
Name: NF5740_high_4
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 2 - 533
Target Start/End: Complemental strand, 9219786 - 9219257
Alignment:
| Q |
2 |
attttagaacagatttcannnnnnnnccctttaatatagccagttcaatttttacctgcagacattgacgaatgtaagacattgaataacacatgtatag |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
9219786 |
attttagaacagatttcattttttttccctttaatatagccagtccatttttt-cctgcagacatcgacgaatgtaagacattgaataacacatgcataa |
9219688 |
T |
|
| Q |
102 |
atgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatggacactctggaaatggaacattggaaggaggttgtcatagacgaga |
201 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9219687 |
gtgaaagtcattgtcgcaacacggatgggttttacgaatgtttttgtcctaatggacaatctggaaatggaacattggaaggaggttgtcatagacgaga |
9219588 |
T |
|
| Q |
202 |
tattgttaccaaggttgccattggtaagtcactaagcatagcccacatatattgtcacaagttttagttaggattgaatcagttgcaaatactcgagttt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||| || |||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
9219587 |
tattgttaccaaggttgccattggtaagtcactaagaataacccacatatattttcacaatttctagttaagattgaatcag-tgcgaatactcgagttt |
9219489 |
T |
|
| Q |
302 |
gataaccgactctagaacaatatttagttacatttacctaagtttaagtcgaactcaagattactaaaagggccgaagggttaagaccaggnnnnnnnta |
401 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| |||| ||||||| |||||| ||| ||||||||||| |||||||||||||||||| || |
|
|
| T |
9219488 |
gataactgactctagaacaatttttagttacatttatctaactttaagttgaactccagactactaaaagggtcgaagggttaagaccaggaaaaaaata |
9219389 |
T |
|
| Q |
402 |
tgattaaagtattcagcatgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctgg |
501 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9219388 |
tgattaaggtattcagcatgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctgg |
9219289 |
T |
|
| Q |
502 |
actaatagtcctatttgtggcggtttcatctc |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9219288 |
actaatagtcctatttgtggcggtttcatctc |
9219257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 57 - 246
Target Start/End: Complemental strand, 9162767 - 9162578
Alignment:
| Q |
57 |
ctgcagacattgacgaatgtaagacattgaataacacatgtatagatgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatgg |
156 |
Q |
| |
|
|||||||||| ||||||||||| || | |||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||| ||||||||||| |
|
|
| T |
9162767 |
ctgcagacatcgacgaatgtaaaacttcaaataacacatgtatagatgaaagtcactgtcgcaacacggatggattatatgaatgtttctgtcctgatgg |
9162668 |
T |
|
| Q |
157 |
acactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagccca |
246 |
Q |
| |
|
||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9162667 |
acaatctggaaatggaacacttgaaggaggttgtcatagacgagatattgttatcaaggttgccattggtatgtcactaaacatagccca |
9162578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 9156955 - 9156784
Alignment:
| Q |
58 |
tgcagacattgacgaatgtaagacattgaataacacatgtatagatgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatgga |
157 |
Q |
| |
|
||||||||| || ||||||||||| | ||||||||||| ||| ||||| |||||||||||| || |||||||| | |||||||| |||||||||||| |
|
|
| T |
9156955 |
tgcagacatcgatgaatgtaagacttcaaataacacatgcataaatgaagatcattgtcgcaatactgatggatctcatgaatgtttctgtcctgatgga |
9156856 |
T |
|
| Q |
158 |
cactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
9156855 |
cactctggaaatggaacattggaaggagggtgtcatagacgagaggtcatcaccaaggttgccattggtaag |
9156784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 9201253 - 9201067
Alignment:
| Q |
58 |
tgcagacattgacgaatgtaagacattgaataacacatgtatagatgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatgga |
157 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||||| ||| ||||| ||||||||||| || |||||||| | ||||||||||||||||||||| |
|
|
| T |
9201253 |
tgcagacatcgatgaatgtaagacggggaataacacatgcataagtgaaaaacattgtcgcaatactgatggatctcatgaatgtttttgtcctgatgga |
9201154 |
T |
|
| Q |
158 |
cactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagcc |
244 |
Q |
| |
|
|| |||||||||||||| |||| |||||||||||||| || |||| || ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9201153 |
caatctggaaatggaacgttggcaggaggttgtcataaacaagatgttattaccaaggttgcaattggtaagaacctaagcatagcc |
9201067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 9171563 - 9171392
Alignment:
| Q |
58 |
tgcagacattgacgaatgtaagacattgaataacacatgtatagatgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatgga |
157 |
Q |
| |
|
||||||||| || ||||||||| || | ||||||||| ||| ||||| |||||||||||||| ||||| | || |||||||| |||||||||||| |
|
|
| T |
9171563 |
tgcagacatcgatgaatgtaagtcaccaactaacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatgga |
9171464 |
T |
|
| Q |
158 |
cactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
229 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9171463 |
caatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9171392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 9179545 - 9179374
Alignment:
| Q |
58 |
tgcagacattgacgaatgtaagacattgaataacacatgtatagatgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatgga |
157 |
Q |
| |
|
||||||||| || ||||||||| || | ||||||||| ||| ||||| |||||||||||||| ||||| | || |||||||| |||||||||||| |
|
|
| T |
9179545 |
tgcagacatcgatgaatgtaagtcaccaactaacacatgcataaatgaagatcattgtcgcaacaaggatgggttctatgaatgtttctgtcctgatgga |
9179446 |
T |
|
| Q |
158 |
cactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaag |
229 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9179445 |
caatctggaaatggaacaaaggaaggagggtgtcatagacgagatgttattaccaaggttgccattggtaag |
9179374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 58 - 246
Target Start/End: Original strand, 9117631 - 9117819
Alignment:
| Q |
58 |
tgcagacattgacgaatgtaagacattgaataacacatgtatagatgaaagtcattgtcgcaacacagatggatcatacgaatgtttttgtcctgatgga |
157 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| ||| || || ||| |||| ||||| |||||||| ||| |||| |||||||| | || |
|
|
| T |
9117631 |
tgcagacattaacgaatgtaagacagggaataacacatgcatatataaagatcactgtcacaacattgatggatcttacaaatgcttttgtccgaagggg |
9117730 |
T |
|
| Q |
158 |
cactctggaaatggaacattggaaggaggttgtcatagacgagatattgttaccaaggttgccattggtaagtcactaagcatagccca |
246 |
Q |
| |
|
|| || || ||||||||| ||||||||| ||||||| || |||| | |||| |||||||| |||||||||| | ||||| ||| |||| |
|
|
| T |
9117731 |
caatccggcaatggaacaagggaaggagggtgtcatacacaagatgtagttatcaaggttgtcattggtaagcctctaagaatatccca |
9117819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 529
Target Start/End: Complemental strand, 9162459 - 9162352
Alignment:
| Q |
422 |
catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg |
521 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||| || || | || ||| ||| || |||||||||| ||||||||||| | || | |||||||||| |
|
|
| T |
9162459 |
catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg |
9162360 |
T |
|
| Q |
522 |
cggtttca |
529 |
Q |
| |
|
|| ||||| |
|
|
| T |
9162359 |
cgatttca |
9162352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University