View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_high_5 (Length: 523)
Name: NF5740_high_5
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Original strand, 41307902 - 41308388
Alignment:
| Q |
20 |
taccaatatcattgaaacgttagtttcaataaatttggaaggaatagatactccttgattctaagaagctgcatggtccatcctcttgtggtttaaactt |
119 |
Q |
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| T |
41307902 |
taccaatatcattgaaacgttagtttcaataaatttggaaggaatagatactccttgattctaagaagctgcatggtccatcctcttgtggtttaaactt |
41308001 |
T |
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| Q |
120 |
taaagtttagcaaactcctaggaaattactaggtaacaatattgttgtcggatactagttcttttacttccttaaaaactccgaaattttttcatagctt |
219 |
Q |
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| T |
41308002 |
taaagtttagcaaactcctaggaaattactaggtaacaatattgttgtcggatactagttcttttacttccttaaaaactccgaaattttttcatagctt |
41308101 |
T |
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| Q |
220 |
tcaattacaaccgaaaaattttagcctttaattttggttcctagctatttagttttatttttatgatagtatatagtatatttgatagtatgaagatgtg |
319 |
Q |
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| T |
41308102 |
tcaattacaaccgaaaaattttagcctttaattttggttcctagctatttagttttatttttatgatagtatatagtatatttgatagtatgaagatgtg |
41308201 |
T |
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| Q |
320 |
aaatttctcacacatnnnnnnnnnnggttcaatgtattctcgtagtttatgtattactctaagccttgtgtttgggttcattgttttgatggcgtttgca |
419 |
Q |
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| T |
41308202 |
aaatttctcacaca-aaaaaaaaaaggctcaatgtattctcgtagtttatgtattactctaagccttgtgtttgggttcattgttttgatggcatttgca |
41308300 |
T |
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| Q |
420 |
cacattttctacttcttatggtggaaaaagagaagaacacacatagatattgaaatggaacagagtaattatgcaaaaggggtgtttt |
507 |
Q |
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| T |
41308301 |
cacattttctacttcttatggtggaaaaagagaagaacacacatagatattgaaatggaacagagtaattatgcaaaaggggtgtttt |
41308388 |
T |
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