View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_high_6 (Length: 478)
Name: NF5740_high_6
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 37496944 - 37497414
Alignment:
| Q |
1 |
aagaagcagtccaccttaacggtcagtcagtggtatggtagttagagccatgcaagagaagttactaactaaagatcaacaaactaaaataaatgtaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
37496944 |
aagaagcagtccaccttaacggtcagtcagtggtatggtagttagagcaatgcaagagaagttactaactaaagatcaacaaactaaaaaaaatgcaata |
37497043 |
T |
|
| Q |
101 |
atctcttcnnnnnnngttctttaccttccattcaaatttccattttcaacaactagcttctctctttttcctaaattatgtatcatatcatgcatgcaac |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497044 |
atctcttctttttttgttctttaccttccattcaaatttccattttcaactactagcttctctctttttcctaaattatgtatcatatcatgcatgcaac |
37497143 |
T |
|
| Q |
201 |
atttcttcctatcccattattttttcaatccttctatgggaagaatcaaagtttccacccttttctctgctaataatggccatcactacactcttcctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497144 |
atttcttcctatcccattattttttcaatccttctatgggaagaatcaaagtttccacccttttctctgctaataatggccatcactacactcttcctct |
37497243 |
T |
|
| Q |
301 |
tgtaaacaaacccaatacacacaaagatcatttcccttcttcagtcttaaaatgttttcgacgatttatctgtggaagtatgcttctattcttctatgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37497244 |
tgtaaacaaacccaatacacacaaagatcatttcccttcttcagtcttaaaatgttttcgacgatttatctgtggaagtatgcttctattcttctatgat |
37497343 |
T |
|
| Q |
401 |
tttccataacttgttaatttagtagttaatgttatgctaaagtttcnnnnnnnnggtgttttacttatctg |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37497344 |
tttccataacttgttaatttagtagttaatgttatgctaaagtttcttttttttggtgttttacttatctg |
37497414 |
T |
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