View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5740_high_7 (Length: 463)

Name: NF5740_high_7
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5740_high_7
NF5740_high_7
[»] chr1 (12 HSPs)
chr1 (1-244)||(50136773-50137018)
chr1 (303-363)||(50138434-50138494)
chr1 (354-433)||(50138929-50139008)
chr1 (246-431)||(41404818-41405006)
chr1 (308-378)||(34970852-34970922)
chr1 (307-377)||(8099726-8099796)
chr1 (236-282)||(50138385-50138431)
chr1 (295-378)||(15582303-15582387)
chr1 (307-378)||(48047038-48047109)
chr1 (319-379)||(49765601-49765661)
chr1 (315-433)||(7521705-7521824)
chr1 (307-377)||(8102105-8102175)
[»] chr8 (3 HSPs)
chr8 (303-433)||(29844922-29845052)
chr8 (248-290)||(29845082-29845124)
chr8 (302-378)||(34924035-34924111)
[»] scaffold0011 (1 HSPs)
scaffold0011 (303-433)||(8548-8677)
[»] chr2 (3 HSPs)
chr2 (307-378)||(10354897-10354968)
chr2 (307-379)||(17998993-17999065)
chr2 (307-378)||(28219734-28219805)
[»] scaffold0022 (2 HSPs)
scaffold0022 (320-431)||(43496-43608)
scaffold0022 (320-431)||(77216-77328)
[»] chr3 (4 HSPs)
chr3 (307-379)||(39439279-39439351)
chr3 (307-378)||(42028633-42028704)
chr3 (307-362)||(44714076-44714131)
chr3 (336-378)||(24373430-24373472)
[»] chr4 (7 HSPs)
chr4 (307-378)||(35292691-35292762)
chr4 (303-392)||(48085246-48085334)
chr4 (307-378)||(50859451-50859522)
chr4 (328-378)||(13779982-13780032)
chr4 (328-378)||(35033214-35033264)
chr4 (306-378)||(31229050-31229122)
chr4 (296-430)||(55842036-55842172)
[»] chr5 (5 HSPs)
chr5 (307-379)||(21521485-21521557)
chr5 (307-379)||(21532051-21532123)
chr5 (307-378)||(4944480-4944551)
chr5 (16-77)||(9806430-9806491)
chr5 (307-378)||(11617881-11617952)
[»] scaffold0039 (1 HSPs)
scaffold0039 (302-378)||(57675-57751)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 50136773 - 50137018
Alignment:
Q  1 ttaaatgcagtatttgatttcaatgttggtatgcaacaactaacaaattgataaaatgagttgaagaaatactgatataaacagcgattgaaactcactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  50136773 ttaaatgcagtatttgatttcaatgttggtatgcaacaactaacaaattgataaaatgggttgaagaaatactgatataaacagcgattgaaactcactt 50136872  T
Q  101 tttcaagcaaaatgcgagttgcagagaaaccgcgcacgagactctcggttccaaagaggacgagagagagaagcaaaatagttagtcagtaac--agagt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||  |||||    
T  50136873 tttcaagcaaaatgcgagttgcagagaaaccgcgcacgagactctcggttccaaagaggacgagagagagaagcagagaagttagtcagtaacagagagt 50136972  T
Q  199 tctaaaattctctttggtgagtttagggtttagggtttagaagata 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50136973 tctaaaattctctttggtgagtttagggtttagggtttagaagata 50137018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 50138434 - 50138494
Alignment:
Q  303 gaacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttc 363  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50138434 gaacagaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttc 50138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 433
Target Start/End: Original strand, 50138929 - 50139008
Alignment:
Q  354 aactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgttataactttctatttcaattttaccctttta 433  Q
    ||||||||||  ||||||||||||||||| ||||||||||||  || ||||||||||| ||||||||| |||||||||||    
T  50138929 aactaatttctcattccattgtttgagaagtcgatggaagggaatgtgttataactttttatttcaatcttaccctttta 50139008  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 431
Target Start/End: Complemental strand, 41405006 - 41404818
Alignment:
Q  246 ggctctgtttggatagtttaaatttaacgaagcggaacggaacggtataa-atggaatg-aacggaataaagatatcattccactgtttggatatttaac 343  Q
    |||||||||||||||  |||||  ||||| ||||||| ||||||| |    |||||||| ||||||||||||||  |||||||||||||||||| || ||    
T  41405006 ggctctgtttggataacttaaaactaacggagcggaatggaacggaacgggatggaatggaacggaataaagattccattccactgtttggatactttac 41404907  T
Q  344 gacggaatggaactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgttataact-ttctatttcaattttacccttt 431  Q
    ||||||||  |  |||||||| |||||||||||||  ||||| | |||| ||  || ||||||| | || |||| ||||||||||||||    
T  41404906 gacggaatctagttaatttcccattccattgtttggaaaatcaacggaacggaatgagttataaatattttattccaattttacccttt 41404818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 34970922 - 34970852
Alignment:
Q  308 gaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    ||||||| || |||||||| ||||||||||||| | ||||||||||||||||||||| | |||||||||||    
T  34970922 gaataaaaatgtcattccattgtttggatattttatgacggaatggaactaatttcccactccattgtttg 34970852  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 8099796 - 8099726
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgttt 377  Q
    |||| |||||| |||||||| |||||||||||| ||| |||||||| ||||||||||| | ||||||||||    
T  8099796 ggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgttt 8099726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 50138385 - 50138431
Alignment:
Q  236 tagaagataaggctctgtttggatagtttaaatttaacgaagcggaa 282  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  50138385 tagaagataaggctctttttggatagtttaaatttaacggagcggaa 50138431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 15582387 - 15582303
Alignment:
Q  295 aatggaatg-aacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    ||||||||| ||||||||||| ||  ||||||| |||||||||| || | || |||||||||||||||| | |||||||||||||    
T  15582387 aatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttg 15582303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 48047109 - 48047038
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||||||| || |||||||| |||||||| |||| | ||| ||||||||||||||||| | |||||||||||    
T  48047109 ggaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttg 48047038  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 49765661 - 49765601
Alignment:
Q  319 tcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttga 379  Q
    |||||||| |||||| |||||| |||| |||||| ||||||||||| | ||||||||||||    
T  49765661 tcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttga 49765601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 433
Target Start/End: Complemental strand, 7521824 - 7521705
Alignment:
Q  315 gatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgttataactt-tct 413  Q
    |||| ||||||| |||||| |||||| | || |||||||| ||||||| | |||| ||||||||| || ||||  |||  |  || |||||||||| | |    
T  7521824 gataccattccattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttataacttattt 7521725  T
Q  414 atttcaattttaccctttta 433  Q
    ||||||||||||||||||||    
T  7521724 atttcaattttaccctttta 7521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 8102105 - 8102175
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgttt 377  Q
    |||| |||||| |||||||| |||||| ||||| ||||| |||||  ||||||||||| | ||||||||||    
T  8102105 ggaacaaagatttcattccattgtttgaatattaaacgatggaataaaactaatttcccactccattgttt 8102175  T

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Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 29845052 - 29844922
Alignment:
Q  303 gaacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgt 402  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||     ||  |    
T  29845052 gaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagtcgatggaacataatggat 29844953  T
Q  403 tataactttctatttcaattttaccctttta 433  Q
    ||||||||| |||||||||||||||||||||    
T  29844952 tataactttttatttcaattttaccctttta 29844922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 290
Target Start/End: Complemental strand, 29845124 - 29845082
Alignment:
Q  248 ctctgtttggatagtttaaatttaacgaagcggaacggaacgg 290  Q
    |||||||||||||| |||||||||||| |||||||||||||||    
T  29845124 ctctgtttggatagcttaaatttaacggagcggaacggaacgg 29845082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 378
Target Start/End: Original strand, 34924035 - 34924111
Alignment:
Q  302 tgaacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||| ||||||||||| |||||||| |||||||||| || | || |||| | ||||| ||| | |||||||||||||    
T  34924035 tgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttg 34924111  T

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Target: scaffold0011 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 433
Target Start/End: Original strand, 8548 - 8677
Alignment:
Q  303 gaacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgt 402  Q
    |||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||  |||||||||||| |||| | ||| |||  |  || ||    
T  8548 gaacagaataaagataccattccact-tttggatatttaatgacggaatggaactaatttctcattccattgtttaagaagttgatagaacagaatgagt 8646  T
Q  403 tataactttctatttcaattttaccctttta 433  Q
    ||||||||| |||||||||||||||||||||    
T  8647 tataactttttatttcaattttaccctttta 8677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 10354968 - 10354897
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||||||| || |||||||| ||||||||||||| | ||||||||||||||||||||| | |||||||||||    
T  10354968 ggaataaaaatttcattccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttg 10354897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 17998993 - 17999065
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttga 379  Q
    |||||||| ||  ||||| | ||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  17998993 ggaataaaaattacattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttga 17999065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 28219805 - 28219734
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||| |||||| |||||||| ||||||||||||  ||| ||||||||||||||||||| | |||||||||||    
T  28219805 ggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttg 28219734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 43496 - 43608
Alignment:
Q  320 cattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgttataac-tttctatttc 418  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||  |||||||||||||  || | ||  ||| ||  || |||||||| ||| ||||||    
T  43496 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 43595  T
Q  419 aattttacccttt 431  Q
    |||||||||||||    
T  43596 aattttacccttt 43608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 431
Target Start/End: Original strand, 77216 - 77328
Alignment:
Q  320 cattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaagggtgtgcgttataac-tttctatttc 418  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||  |||||||||||||  || | ||  ||| ||  || |||||||| ||| ||||||    
T  77216 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 77315  T
Q  419 aattttacccttt 431  Q
    |||||||||||||    
T  77316 aattttacccttt 77328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 39439279 - 39439351
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttga 379  Q
    |||||||| || |||||||| ||||||||||||| | ||||||||| ||||||||||| | ||||||||||||    
T  39439279 ggaataaaaatttcattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttga 39439351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 42028633 - 42028704
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||| |||||| |||||||| ||||||||||||  ||| ||||||||||||||||||| | |||||||||||    
T  42028633 ggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttg 42028704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 44714131 - 44714076
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaattt 362  Q
    ||||||||||| |||||| | ||||||||||||| |||| ||||||||||||||||    
T  44714131 ggaataaagatttcattcaattgtttggatattttacgatggaatggaactaattt 44714076  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 378
Target Start/End: Original strand, 24373430 - 24373472
Alignment:
Q  336 tatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttg 24373472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 35292762 - 35292691
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||||||| || ||||| || ||||||||||||| | ||||||||||||||||||||| | |||||||||||    
T  35292762 ggaataaaaatttcattacattgtttggatatttcaagacggaatggaactaatttcccactccattgtttg 35292691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 392
Target Start/End: Complemental strand, 48085334 - 48085246
Alignment:
Q  303 gaacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaa 392  Q
    |||||||||||| ||  ||||||| ||||||||||||| |||| |||||| | ||||||| | ||||| |||||||| ||||||| ||||    
T  48085334 gaacggaataaaaattacattccattgtttggatattt-acgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaa 48085246  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 50859522 - 50859451
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||||||||||  ||||||| |||||||||||||   ||||||||| ||||||||||| | |||||| ||||    
T  50859522 ggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttg 50859451  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 13780032 - 13779982
Alignment:
Q  328 tgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    ||||||||||||| || |||||||||||||||||| | | |||||||||||    
T  13780032 tgtttggatattttactacggaatggaactaattttccactccattgtttg 13779982  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 35033214 - 35033264
Alignment:
Q  328 tgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    ||||||||||||| || |||||||||||||||||| | | |||||||||||    
T  35033214 tgtttggatattttactacggaatggaactaattttccactccattgtttg 35033264  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 31229122 - 31229050
Alignment:
Q  306 cggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    ||||||||| || |||||||||||||||||||||| | ||  ||||| ||| ||||||  | |||||||||||    
T  31229122 cggaataaatatttcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttg 31229050  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 430
Target Start/End: Complemental strand, 55842172 - 55842036
Alignment:
Q  296 atggaatgaa-cggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttgagaaatcgatggaagg 394  Q
    |||||||||| ||||||| | ||  |||||||||||||||| |||| | || |||||||||  || |||| |||| ||||||||  ||||  ||||||||    
T  55842172 atggaatgaaacggaatagatattccattccactgtttggacattttatgatggaatggaataaacttcccattcgattgtttggaaaatgaatggaagg 55842073  T
Q  395 gtgtgcgttataactt-tctatttcaattttaccctt 430  Q
      | | |||||||||| | ||||||| ||||||||||    
T  55842072 aagagagttataacttatttatttcatttttaccctt 55842036  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 21521557 - 21521485
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttga 379  Q
    |||||||| || |||||||| ||||||||||||  |||| |||||||||| |||| | |||||||||||||||    
T  21521557 ggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttga 21521485  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 21532123 - 21532051
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttga 379  Q
    |||||||| || |||||||| ||||||||||||  |||| |||||||||| |||| | |||||||||||||||    
T  21532123 ggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttga 21532051  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 4944551 - 4944480
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||| ||||||  ||||||| ||||||||||||  |||||| ||||||||||||||| || |||||||||||    
T  4944551 ggaacaaagattccattccattgtttggatattatacgacgaaatggaactaatttcatactccattgtttg 4944480  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 9806430 - 9806491
Alignment:
Q  16 gatttcaatgttggtatgcaacaactaacaaattgataaaatgagttgaagaaatactgata 77  Q
    ||||||||| ||||||||| ||||||||||| ||||| |||||||| ||  |||||||||||    
T  9806430 gatttcaatattggtatgctacaactaacaatttgatcaaatgagtagagaaaatactgata 9806491  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 11617952 - 11617881
Alignment:
Q  307 ggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||||||| ||  ||||||| |||||| |||||| | ||||||||| ||||||||||| | |||||||||||    
T  11617952 ggaataaaaattccattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttg 11617881  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 57751 - 57675
Alignment:
Q  302 tgaacggaataaagatatcattccactgtttggatatttaacgacggaatggaactaatttcctattccattgtttg 378  Q
    |||| ||||||||||| |||||||| |||||||||| || | || |||| ||||||| ||| | |||||||||||||    
T  57751 tgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttg 57675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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