View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_1 (Length: 640)
Name: NF5740_low_1
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 308 - 620
Target Start/End: Original strand, 49159456 - 49159769
Alignment:
| Q |
308 |
ttacattattgaattgttatgttgatggccaaatctcattaatatgcatgaatgttttacaatcaaaagaaatactattcgttagtctattttagatatc |
407 |
Q |
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| T |
49159456 |
ttacattattgaattgttatgttgatggccaaatctcattaatatacatgaatgttttacaatcaaaagaattactattcgttagtctattttagatatc |
49159555 |
T |
|
| Q |
408 |
ataattattacgatcaagtttttctttgtaagctattactaatactttttcattaaatcaaatgtagatgttactatgacattttgatgggtgatatttc |
507 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49159556 |
ataattattacgatcaagtttttctttgtaagttattactaatactttttcattaaaccaaatgtagatgttgctatgacattttgatgggtgatatttc |
49159655 |
T |
|
| Q |
508 |
ccatcatagtattgagaaaaatatcttggatatagtttaatatgtagatgtatctcatttgttacaccaatacaat-cgtgacataatgcggtgtattaa |
606 |
Q |
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| T |
49159656 |
ctatcatagtattgagaaaaacatcttggatatagtttagtatgtagatgtatctcatttgttacaccaatacaatccatgacataatgtgctgtattaa |
49159755 |
T |
|
| Q |
607 |
gcgtataggattat |
620 |
Q |
| |
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|||| ||||||||| |
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| T |
49159756 |
gcgtgtaggattat |
49159769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 53 - 310
Target Start/End: Original strand, 49159176 - 49159429
Alignment:
| Q |
53 |
ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattcttgctcaaatcttcatcttatcatccaagcccgtttggc |
152 |
Q |
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||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49159176 |
ggggaattatagtcatttcagttgggaattagcattttttgttggataaagagcagaattcttgctcaaatcttcatcttatcatccaagcccgtttggc |
49159275 |
T |
|
| Q |
153 |
ccaaaatcataaataccaaaagtctattattctgtccgttcagacattttctttcaacactcattttattatcggatgaatatgatattcaaataggcat |
252 |
Q |
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| T |
49159276 |
ccaaaatcataaataccaaagacccattgtttagtcc-----gacactttcttttaacgctcattttattattggatgaatatgatattcaaataggcat |
49159370 |
T |
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| Q |
253 |
tgccatttaaaaaataatgt-tttatccatgtggatttatgagatttatataatggtta |
310 |
Q |
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| T |
49159371 |
tgccatttaaaaaataatgtccttatccatgtggatttatgagatttatataatggtta |
49159429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 42451963 - 42452018
Alignment:
| Q |
58 |
attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc |
113 |
Q |
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|||||||| ||||||||| ||||||| ||||||| ||||||||||| |||||||| |
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| T |
42451963 |
attatagtcatttcagttgagaatgaacatttttgattggataaagaacagaattc |
42452018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 26227813 - 26227873
Alignment:
| Q |
53 |
ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc |
113 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
26227813 |
ggggtattatagtattttcagttcggaatgagcattttttgttgggtaaagagcaggattc |
26227873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 41101315 - 41101370
Alignment:
| Q |
53 |
ggggaattatagttatttcagttaag-aatgagcattttttgttggataaagagca |
107 |
Q |
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|||| |||||||| ||||||||| | ||||||||||||||||||||||||||||| |
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| T |
41101315 |
ggggcattatagtcatttcagttggggaatgagcattttttgttggataaagagca |
41101370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 33609438 - 33609493
Alignment:
| Q |
58 |
attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattc |
113 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||| |||||| || ||||| |
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| T |
33609438 |
attatagtcatttcagttgagaatgagcatttttggttgggtaaagaccaaaattc |
33609493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 32158679 - 32158622
Alignment:
| Q |
58 |
attatagttatttcagttaagaatgagcattttttgttggataaagagcagaattctt |
115 |
Q |
| |
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|||||||| |||| |||| |||||||||||||| ||||| ||||||||| ||||||| |
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| T |
32158679 |
attatagtcattttagttgggaatgagcatttttggttgggtaaagagcataattctt |
32158622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Complemental strand, 40520100 - 40520067
Alignment:
| Q |
82 |
gagcattttttgttggataaagagcagaattctt |
115 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
40520100 |
gagcaatttttgttggataaagagcagaattctt |
40520067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 2847264 - 2847326
Alignment:
| Q |
53 |
ggggaattatagttatttcagttaagaatgagcattttttgttggataaagagcagaattctt |
115 |
Q |
| |
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|||| |||||||| ||||||||| |||| | |||||||||| || ||||||||||||||||| |
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| T |
2847264 |
ggggcattatagtcatttcagttgggaataaacattttttgtagggtaaagagcagaattctt |
2847326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 10884523 - 10884567
Alignment:
| Q |
69 |
ttcagttaagaatgagcattttttgttggataaagagcagaattc |
113 |
Q |
| |
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||||||| |||||||||| ||||| |||| ||||||||||||||| |
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| T |
10884523 |
ttcagttgagaatgagcaattttttttgggtaaagagcagaattc |
10884567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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