View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_11 (Length: 413)
Name: NF5740_low_11
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 111 - 402
Target Start/End: Complemental strand, 33631680 - 33631389
Alignment:
| Q |
111 |
ctacacttttaagcatttgattacgtaagtttcaaaatattcttattatatttgtttcttaaactaatgcatcaagaacaccagttattttcctaataga |
210 |
Q |
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| T |
33631680 |
ctacacttttaagcatttgattacgtaagtttcaaaaaattcttattatatttgtttcttaaactaatgcatcaagaacaccggttattttcctaataga |
33631581 |
T |
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| Q |
211 |
aatagcagtagtaggnnnnnnnttgatggatccaaccaccatgccattaaaggcattaagagagagatggggcttcagtttcaggtaaggctacctatct |
310 |
Q |
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| T |
33631580 |
aatagcagtagtaggaaaaaaattgatggatccaactaccatgccattaaaggcattaagagagagatggggcttcagtttcaggtaaggctacctatct |
33631481 |
T |
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| Q |
311 |
tcattaaaccaccttaaattcacttaaatgcaaacttgaatatataccaaattaaaacaaaattgatttcttgatcatccttttttcttcat |
402 |
Q |
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| T |
33631480 |
tcattaaaccaccttaaattcacttaaatgcaaacttgaatatataccaaattaaaacaaaattgatttcttgatcatccttttttcttcat |
33631389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 33631768 - 33631735
Alignment:
| Q |
21 |
tcaatagaaagagtcatgttaaccgatacttccg |
54 |
Q |
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| T |
33631768 |
tcaatagaaagagtcatgttaaccgatacctccg |
33631735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 15873839 - 15873904
Alignment:
| Q |
112 |
tacacttttaagcattt-gattacgtaagtttcaaaatattcttattatatttgtttcttaaacta |
176 |
Q |
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|||||||||||| |||| |||||| ||||||||| | |||||||||||||||||||||| ||||| |
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| T |
15873839 |
tacacttttaagtattttgattacacaagtttcaagaaattcttattatatttgtttctttaacta |
15873904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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