View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_12 (Length: 405)
Name: NF5740_low_12
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 130 - 386
Target Start/End: Complemental strand, 24736534 - 24736278
Alignment:
| Q |
130 |
ccctgttttaaacccctttgaggccttatatcataattaggttttctgttgatagggatagaaaagctgaccatggacacacatctcataatagtatgaa |
229 |
Q |
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| T |
24736534 |
ccctgttttaaacccctttgaggccttatatcagaattaggttttccgttgataaggatagaaaagctgaccatggacacacatctcataatagtatgaa |
24736435 |
T |
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| Q |
230 |
ccagagctaaacaaccttcttggtcccttcacttttctataatacctgcatatttaagattgtggaacttgaagatttcatgagaaagatgaactctaca |
329 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24736434 |
ccagagctaaactaccttcttggtcccttcacttttctataatacccgcatatttaagattgtggaacttgaagatttcatgagaaagatcaactctaca |
24736335 |
T |
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| Q |
330 |
tgactgggtacactcttttcggaaagagaaaatcatcccctagattcaagtgaaacc |
386 |
Q |
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| T |
24736334 |
tgacttggtacactcttttcaaaaagagaaaatcatcccctagattcaagtgaaacc |
24736278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 24737895 - 24737741
Alignment:
| Q |
1 |
aagttgattttttgacttgaagaagttaactatctgtagcaagtgagtaggatatatgaatgactcaactatagatatgattta---------------a |
85 |
Q |
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| T |
24737895 |
aagttgattttttgacttgaagaagttaactatctgtagcaagtcagtaggatatatgaatgactcaactatagatatgatttagtaattaacccataca |
24737796 |
T |
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| Q |
86 |
acacatcagcacaacataggaaaagaaagggaaagagaggatccccctgttttaaa |
141 |
Q |
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| T |
24737795 |
acacatcagcacaacataggaaaagaaagggaaagagaggat-cccctgttttaaa |
24737741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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