View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5740_low_13 (Length: 389)

Name: NF5740_low_13
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5740_low_13
NF5740_low_13
[»] chr8 (4 HSPs)
chr8 (224-379)||(18752900-18753056)
chr8 (15-68)||(18734323-18734376)
chr8 (316-376)||(18727176-18727235)
chr8 (18-68)||(18727047-18727097)
[»] chr7 (2 HSPs)
chr7 (184-228)||(246064-246108)
chr7 (78-112)||(23861998-23862032)
[»] chr2 (2 HSPs)
chr2 (184-234)||(25553047-25553097)
chr2 (71-114)||(19208550-19208593)
[»] chr4 (1 HSPs)
chr4 (71-114)||(18931238-18931281)
[»] chr6 (2 HSPs)
chr6 (184-226)||(14560601-14560643)
chr6 (71-104)||(14560490-14560523)
[»] scaffold0236 (1 HSPs)
scaffold0236 (66-114)||(12775-12823)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 224 - 379
Target Start/End: Original strand, 18752900 - 18753056
Alignment:
Q  224 caagtccgtgtagtatctaattaannnnnnnn-gtctaattttcgtctcataattattaatccttacatttttggtcccttattttttatctatcattca 322  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18752900 caagtccgtgtagtatctaattaatttttttttgtctaattttcgtctcataattattaatccttacatttttggtcccatattttttatctatcattca 18752999  T
Q  323 atttggtcctctccatcaatttgttttgtctttcttcatcttctttgtcatcttcat 379  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18753000 atttggtcctctccatcaatttattttgtctttcttcatcttctttgtcatcttcat 18753056  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 18734323 - 18734376
Alignment:
Q  15 ataacacacttataatattttagattaaaatatatgttaaattgaacgtttagt 68  Q
    |||||||||| |||||| || |||||| |||||||||||||||||| |||||||    
T  18734323 ataacacactcataatacttcagattagaatatatgttaaattgaatgtttagt 18734376  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 18727176 - 18727235
Alignment:
Q  316 tcattcaatttggtcctctccatcaatttgttttgtctttcttcatcttctttgtcatctt 376  Q
    ||||||||  ||||||||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  18727176 tcattcaacatggtcctctccttcaattt-ttttgtctttcttcatcttcttagtcgtctt 18727235  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 18727047 - 18727097
Alignment:
Q  18 acacacttataatattttagattaaaatatatgttaaattgaacgtttagt 68  Q
    ||||||| |||||| || |||||| |||||||||||||||||| |||||||    
T  18727047 acacactcataatacttcagattagaatatatgttaaattgaatgtttagt 18727097  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 246108 - 246064
Alignment:
Q  184 cactgcagagcatccagtgaaattatcatcggagaggatccaagt 228  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  246108 cactgcagagcatccagtgaaattttcatcggagaggatccaagt 246064  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 23861998 - 23862032
Alignment:
Q  78 gattctctcctgtgattggagagtccaatgagatc 112  Q
    |||||||||||||||| ||||||||||||||||||    
T  23861998 gattctctcctgtgatcggagagtccaatgagatc 23862032  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 25553097 - 25553047
Alignment:
Q  184 cactgcagagcatccagtgaaattatcatcggagaggatccaagtccgtgt 234  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  25553097 cactgcagagcatccagtaaaattctcatcggagaagatccaagtccgtgt 25553047  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 19208550 - 19208593
Alignment:
Q  71 gggaggggattctctcctgtgattggagagtccaatgagatcct 114  Q
    |||||||||||||||||||||| ||||||||||| |||||||||    
T  19208550 gggaggggattctctcctgtgagtggagagtccagtgagatcct 19208593  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 18931238 - 18931281
Alignment:
Q  71 gggaggggattctctcctgtgattggagagtccaatgagatcct 114  Q
    |||||||||||||||||||||| |||||||| || |||||||||    
T  18931238 gggaggggattctctcctgtgactggagagttcagtgagatcct 18931281  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 14560601 - 14560643
Alignment:
Q  184 cactgcagagcatccagtgaaattatcatcggagaggatccaa 226  Q
    |||||||||||||||||||||||| |||  |||||||||||||    
T  14560601 cactgcagagcatccagtgaaattctcactggagaggatccaa 14560643  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 14560490 - 14560523
Alignment:
Q  71 gggaggggattctctcctgtgattggagagtcca 104  Q
    |||| |||||||||||||||||||||||||||||    
T  14560490 gggaagggattctctcctgtgattggagagtcca 14560523  T

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Target: scaffold0236 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 12823 - 12775
Alignment:
Q  66 agttcgggaggggattctctcctgtgattggagagtccaatgagatcct 114  Q
    |||| |||||||||||||||| ||||| | |||| ||||||||||||||    
T  12823 agtttgggaggggattctctcgtgtgactagagaatccaatgagatcct 12775  T

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