View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_14 (Length: 347)
Name: NF5740_low_14
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 31560494 - 31560812
Alignment:
| Q |
18 |
attcactatgtgtatggtggttttctgtgtgagagagcaaacaaaactccatcacgcagttcgtcgcagttttaaatatcaaccattgatttgagattga |
117 |
Q |
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| T |
31560494 |
attcactatgtgtatggtggttttctgtgtgagagagcaaacaagactccatcacgcagttcgttgcagttttaaatatcaaccattgatttgagattga |
31560593 |
T |
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| Q |
118 |
atgactcagattacacattcattcaatttattgtaattgatctcaatcgttgatttagacggacattcgagataagttaccgcagctattctgattccat |
217 |
Q |
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| T |
31560594 |
atgactcagattacacattcattcaatttattataattgatctcaatcgttgatttagacggacattcgagataagttaccgcagctattctgattccat |
31560693 |
T |
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| Q |
218 |
actttacatagacaataacttgccttgctgaaaattctagagaaaagctttctgaggcagtgaggctcactgtcttacagacttgcatccagttataaag |
317 |
Q |
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| T |
31560694 |
actttacatagacaataacttgccttgctgaaaattctagagaaaagctttctgaggcagtgaggctcactgtcttacagacttgcatccagttataaag |
31560793 |
T |
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| Q |
318 |
agctgtctcaatgatgatg |
336 |
Q |
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| T |
31560794 |
agctgtctcaatgatgatg |
31560812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 31557669 - 31557870
Alignment:
| Q |
18 |
attcactatgtgtatggtggttttctgtgtgagagagcaaacaaaactccatcacgcagttcgtcgcagttttaaatatcaaccattgatttgagattga |
117 |
Q |
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| T |
31557669 |
attcactatgcatatgatggttatatgtgtgagatagcaaacaaaactcaatcacgcagttcgtcgcagttttaaatatcaaccattgattttagattga |
31557768 |
T |
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| Q |
118 |
atgactcagattacacattcattcaatttattgtaattgatctcaatcgttgatttagacggacattcgagataagttaccgcagctattctgattccat |
217 |
Q |
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| T |
31557769 |
atgactcagatt--acattcatttaatttattgtaactgatctcaaccattgatttagacggacattcgagatcagttacagcagctattctgattccat |
31557866 |
T |
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| Q |
218 |
actt |
221 |
Q |
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|||| |
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| T |
31557867 |
actt |
31557870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 9837947 - 9838108
Alignment:
| Q |
69 |
tcacgcagttcgtcgcagttttaaatatcaaccattgatttgagattgaatgactcagattacacattcattcaatttattgtaattgatctcaatcgt- |
167 |
Q |
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| T |
9837947 |
tcacgcagttcgtcgcagttttaaatctcaaccattgatttgagattgaaccgctcagattacacattcatttaatttattgttactgatctcgaccatt |
9838046 |
T |
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| Q |
168 |
-tgatttaga-cggacattcgagataag-----ttaccgcagctattctgattccatacttt |
222 |
Q |
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| T |
9838047 |
gtgatttagatcgggcattcgagatcagttaccttaccgcagctattctgattccatacttt |
9838108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 278 - 336
Target Start/End: Original strand, 9838278 - 9838336
Alignment:
| Q |
278 |
tgaggctcactgtcttacagacttgcatccagttataaagagctgtctcaatgatgatg |
336 |
Q |
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| T |
9838278 |
tgaggctcactgtcttacacacttgcatccagttataaagagctgtctcaatgatgatg |
9838336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 31558017 - 31558060
Alignment:
| Q |
245 |
ctgaaaattctagagaaaagctttctgaggcagtgaggctcact |
288 |
Q |
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| T |
31558017 |
ctgaatattctagagaaaagctttctgaggcagtgaggctcact |
31558060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 9838124 - 9838156
Alignment:
| Q |
211 |
attccatactttacatagacaataacttgcctt |
243 |
Q |
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| T |
9838124 |
attccatactttacatagacagtaacttgcctt |
9838156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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