View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_16 (Length: 330)
Name: NF5740_low_16
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_16 |
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| [»] scaffold1086 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 27 - 323
Target Start/End: Complemental strand, 30572415 - 30572122
Alignment:
| Q |
27 |
tgaaagatacaaaaa-cattagataaattatggtagcaattaataaaggtaacaaacagatagaatcaccttctgcagcatataaggaggctgatttcga |
125 |
Q |
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| T |
30572415 |
tgaaagatacaaaaaacattagataaattatggtagcaat----aaaggtaacaaacatatagaatcaccttctgcagcatataaggaggttgatttcga |
30572320 |
T |
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| Q |
126 |
cctccagatgtagtagctctagctccatgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattgaaattcgatatatttggtacttcgt |
225 |
Q |
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| T |
30572319 |
cctccagatgtagtagctctagctccatgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattaaaattcgatatatttggtacttcgt |
30572220 |
T |
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| Q |
226 |
cgatttgattggaattcgatatttcacgaagaataatttgatatataaggtatccatcatcgctcgttggttataactttatcattgaagtataatct |
323 |
Q |
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| T |
30572219 |
tgatttgattggaattcgatatttcacaaagaataatttgatatataaggtatccatcatcgctcgttggttataactttatcattgacgtttaatct |
30572122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 30568906 - 30568603
Alignment:
| Q |
1 |
ttcatctttaaacttatcaatgaatttgaaagatacaaaaacattagataaattatggtagcaattaataaaggtaacaaacagatagaatcaccttctg |
100 |
Q |
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| T |
30568906 |
ttcatctttaaacttatcaatgaa------agatacaaaaacattggataaattatggtagcaat----aaaggtaacaaacatatagaatcaccttctg |
30568817 |
T |
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| Q |
101 |
cagcatataaggaggctgatttcgacctccagatgtagtagctctagctccatgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattg |
200 |
Q |
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| T |
30568816 |
caacatataaggaggttgatttcgacctccagatgtagtagctctagccccatgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattg |
30568717 |
T |
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| Q |
201 |
aaattcgatatatttggtacttcgtcgatttgattggaattcgatatttcacgaagaataatttgatatataaggtatccatcatcgctcgttggttata |
300 |
Q |
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| T |
30568716 |
aa---------atttggtacttcgttgatttgattggaattcgatatttcacgaagaataatttgatatataaggtatccatcatcgctcgctggttata |
30568626 |
T |
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| Q |
301 |
actttatcattgaagtataatct |
323 |
Q |
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| T |
30568625 |
actttatcattgaagtttaatct |
30568603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 30545887 - 30545832
Alignment:
| Q |
211 |
tatttggtacttcgtcgatttgattggaattcgatatttcacgaagaataatttga |
266 |
Q |
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| T |
30545887 |
tatttggtacttcgtcgatttgattaaaattcgatatttcatggagaataatttga |
30545832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1086 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1086
Description:
Target: scaffold1086; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 1133 - 1078
Alignment:
| Q |
211 |
tatttggtacttcgtcgatttgattggaattcgatatttcacgaagaataatttga |
266 |
Q |
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| T |
1133 |
tatttggtacttcgtcgatttgattaaaattcgatatttcatggagaataatttga |
1078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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