View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5740_low_18 (Length: 318)
Name: NF5740_low_18
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 5980517 - 5980716
Alignment:
| Q |
11 |
caaaggttgaaatgaaactgcaactgaataataactcagtgtacaagtttaggcttctttgcaactttatcatgtctacaagtttgaacacactttgagg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5980517 |
caaaggttgaaatgaaactgcaactgaataataactcagtgtacaagtttaggcttctttgcaactttatcatgtctactagtttgaacacactttgagg |
5980616 |
T |
|
| Q |
111 |
tcaaatttgaatcttgtttttgctcattaaaaaattcttctagtccacttgtgagtgtagattttgatgtcaaagaagctgctaggaggatcagagcctg |
210 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
5980617 |
tcaaatttgaatcttgttttggcatattaagaaattcttctagtccacttgtgagtgtagattttgatgtcaaagaagctgctaggaggctcagtgcctg |
5980716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 5995211 - 5995410
Alignment:
| Q |
12 |
aaaggttgaaatgaaactgcaactgaataataactcagtgtacaagtttaggcttctttgcaactttatcatgtctacaagtttgaacacactttgaggt |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | | ||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
5995211 |
aaaggttgaaatgaaactgcaactgtataataactcagtcttctagtttaggcttctttgcaactttatcaagcctactagtttgaacacactttgaggt |
5995310 |
T |
|
| Q |
112 |
caaatttgaatcttgtttttgctcattaaaaaattcttctagtccacttgtgagtg-tagattttgatgtcaaagaagctgctaggaggatcagagcctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| || |||| || ||||||||||||| |||||||| |||||| ||| |||||| |
|
|
| T |
5995311 |
caaatttgaatcttgtttttgctcattaaaaaattctttcagtccactagtcagtgttaaattttgatgtcaaggaagctgcaaggaggctcaaagcctg |
5995410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 5992860 - 5993036
Alignment:
| Q |
23 |
tgaaactgcaactgaataataactcagtgtacaagtttaggcttctttgcaactttatcatgtctacaagtttgaacacactttgaggtcaaatttgaat |
122 |
Q |
| |
|
|||||||||||||||||||||| ||| | | ||||||| | ||||||| || |||| |||||| |||||| | | ||||||| ||||||||||||| |
|
|
| T |
5992860 |
tgaaactgcaactgaataataattcaatcttatggtttaggatcatttgcaagttcatcaagtctactagtttgtatatactttgacgtcaaatttgaat |
5992959 |
T |
|
| Q |
123 |
cttgtttttgctcattaaaaaattcttctagtcc-acttgtgagtgtagattttgatgtcaaagaagctgctaggag |
198 |
Q |
| |
|
|||||| || ||||| ||| ||||||||||| ||| || |||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
5992960 |
tgtgttttagcacattatgaaagtcttctagtccgactagtcagtgtaaattttgatgtcaaggaagctgcaaggag |
5993036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 5632895 - 5632787
Alignment:
| Q |
102 |
actttgaggtcaaatttgaatcttgtttttgctcattaaaaaattcttctagtccacttgtgagtgtagattttgatgtcaaagaagctgctaggaggat |
201 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || || ||||||| | |||||||||||| || |||||| |||||||||| | |||||||| || ||| | |
|
|
| T |
5632895 |
actttgatgtcaaatttgattcttgttttggcacaataaaaaagttttctagtccactagtcagtgtaaattttgatgtaagggaagctgcaagtaggct |
5632796 |
T |
|
| Q |
202 |
cagagcctg |
210 |
Q |
| |
|
|| |||||| |
|
|
| T |
5632795 |
caaagcctg |
5632787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Original strand, 5980777 - 5980808
Alignment:
| Q |
271 |
taaccattttggtccttgaaagtgtgactact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5980777 |
taaccattttggtccttgaaagtgtgactact |
5980808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University