View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_21 (Length: 303)
Name: NF5740_low_21
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 45867142 - 45866875
Alignment:
| Q |
18 |
atcacatggagatacatatatttgtttctctgcaataatgttcaagttttagatggagggccacccgaaaactgggtaaaaacaaagaagcgcaagaaaa |
117 |
Q |
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| T |
45867142 |
atcacatggagatacatatatttgtttctctgcaataatgttcaagttttagatggagggccacccgaaaactgggtaaaaacaaagaagcacaagaaaa |
45867043 |
T |
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| Q |
118 |
cgatggctagctaggtcaagaaagatcaaacgaccagcgtcccccacagacatcgggtatctatcatatatgaaaagcaaccgaataatgtttgccagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45867042 |
cgatggctagctaggtcaagaaagatcaaacgaccagcgtcccccacagacatcgggtatctatcatatatgaaaagcaaccgaataatgtttgccagaa |
45866943 |
T |
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| Q |
218 |
ttcaatttctttttatcaaaaagccataaactagtttacatatatgaattatagtgcgtggtatttat |
285 |
Q |
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| T |
45866942 |
ttcaatttctttttatcaaaaagccataaactagtttacatatatgaattatagtgcgtggtatttat |
45866875 |
T |
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