View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5740_low_22 (Length: 279)

Name: NF5740_low_22
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5740_low_22
NF5740_low_22
[»] chr7 (7 HSPs)
chr7 (8-279)||(29899632-29899911)
chr7 (162-273)||(29885547-29885657)
chr7 (128-228)||(29107217-29107317)
chr7 (125-199)||(29453742-29453816)
chr7 (47-88)||(29453865-29453906)
chr7 (13-77)||(29107080-29107144)
chr7 (127-203)||(29430603-29430679)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 29899632 - 29899911
Alignment:
Q  8 ccaagaatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaatttcttgaaagttgcttttctagggtttact 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29899632 ccaacaatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaatttcttgaaagttgcttttctagggtttact 29899731  T
Q  108 tgattgaatttatgttc--------atgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatga 199  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29899732 tgattgaatttatgttcgtttggatatgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatga 29899831  T
Q  200 ctatgagactatctattggctattgttactggcttgacaatatcttttgttct-aatgaatttagtattgtttttatatta 279  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||    
T  29899832 ctatgagactatctattggctattgttactggcttgacaatatc-ttggttctaaatgaatttagtattgtttttatatta 29899911  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 29885547 - 29885657
Alignment:
Q  162 tttttatgattgcttatgttaattgtatttttgaatgactatgagactatctattggctattgttactggcttgacaatatcttttgttctaatgaattt 261  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||| || || ||| ||||||||||    
T  29885547 tttttatgattgcttaagttaattgtatttttgaatgactatgacactatctattggttattgttactgacttgataatctc-ttggttttaatgaattt 29885645  T
Q  262 agtattgttttt 273  Q
    | ||||||||||    
T  29885646 attattgttttt 29885657  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 29107217 - 29107317
Alignment:
Q  128 ttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatgactatgagactatctattggctattgtta 227  Q
    ||||||| ||||||| | |||||| |||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||| |||    
T  29107217 ttgtttttattataattgattgagtgattattcatttttatgactgcttaggttaattgtatttttggatgactatgagactatctatttgctattatta 29107316  T
Q  228 c 228  Q
    |    
T  29107317 c 29107317  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 29453816 - 29453742
Alignment:
Q  125 atgttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatga 199  Q
    ||||||||||||||||||   ||||||  | ||||| ||||||||||||||||  || |||||||||||||||||    
T  29453816 atgttgttttcattataatcgattgagtaaatattcgtttttatgattgcttagattgattgtatttttgaatga 29453742  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 29453906 - 29453865
Alignment:
Q  47 ccatggattacactgaaagcttagtttcaatttcttgaaagt 88  Q
    ||||||| |||||||||||||||||||||||||  |||||||    
T  29453906 ccatggactacactgaaagcttagtttcaattttatgaaagt 29453865  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 29107080 - 29107144
Alignment:
Q  13 aatataactagagaagaagtatgcgggttttgggccatggattacactgaaagcttagtttcaat 77  Q
    ||||||||||||||||| | | ||  || |||||| |||||||||  ||||||||||||||||||    
T  29107080 aatataactagagaagatgcacgcttgtgttgggctatggattacgttgaaagcttagtttcaat 29107144  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 29430679 - 29430603
Alignment:
Q  127 gttgttttcattataagttattgagagattattcctttttatgattgcttatgttaattgtatttttgaatgactat 203  Q
    ||||||||||||||||   |||||| || |||||  |||| ||||||||||  || |||||| ||||||||||||||    
T  29430679 gttgttttcattataatcgattgagtgaatattcgattttctgattgcttagattgattgtaattttgaatgactat 29430603  T

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