View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5740_low_23 (Length: 252)
Name: NF5740_low_23
Description: NF5740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5740_low_23 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 10782 - 11022
Alignment:
| Q |
1 |
acacgacaaagttcaacaaaagacggtcctcacaaccatgttgggatcaacataaatagcatcgcgtctattgtacaagcatcgttggataacactaagg |
100 |
Q |
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| T |
10782 |
acacgacaaagttcaacaaaagacggtcctcacaaccatgttggaatcaacataaatagcatcgcgtctattgtacaagcatcgttggataacactaagg |
10881 |
T |
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| Q |
101 |
ttaatctttcatctggtatacatgtaactgtgagaattcaatatttcaatgatgtgatatctgtttttgcttcaatgggtgactatttactagattctat |
200 |
Q |
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| T |
10882 |
ttaatctttcatctggtatacatgtaactgtgagaattcaatatttcaatgatgtgatatctgtttttgcttcaatgggtgactatttactagattctat |
10981 |
T |
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| Q |
201 |
ggagaccattttggtatctccacctcttaatctatcttctt |
241 |
Q |
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| T |
10982 |
ggagaccattttggtatctccacctcttaatctatcttctt |
11022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 19937 - 19720
Alignment:
| Q |
25 |
ggtcctcacaaccatgttgggatcaacataaatagcatcgcgtctattgt-acaagcatcgttggataacactaaggttaatctttcatctggtatacat |
123 |
Q |
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| T |
19937 |
ggtcctgacaaccatgttggaatcaacataaatagcatctcttc-attgacacaagcatcattggagaacactaaaatcaatatttcatctggtttagat |
19839 |
T |
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| Q |
124 |
gtaactgtgagaattcaatatttcaatgatgtgatatctgt-ttttgcttcaatgggtgactatttactagattctatggagaccattttggtatctcca |
222 |
Q |
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| T |
19838 |
gtaactgtgagaattcaatattccaatgatataatatctgttttttggttcaatgagtaaaaactcaaatgattttatggagacccttttggtatctcca |
19739 |
T |
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| Q |
223 |
cctcttaatctatcttctt |
241 |
Q |
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| T |
19738 |
cctcttaatctctcttctt |
19720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 36537 - 36688
Alignment:
| Q |
75 |
acaagcatcgttggataacactaaggttaatctttcatctggtatacatgtaactgtgagaattcaatatttcaatgatgtgatatctgtttttgcttca |
174 |
Q |
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||||||||| ||||| ||||||||||| ||||||||||||||| || |||||||| ||||||||||||||| ||||||| | ||||||||||||| |||| |
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| T |
36537 |
acaagcatcattggaaaacactaaggtcaatctttcatctggtttagatgtaactatgagaattcaatattccaatgatataatatctgtttttggttca |
36636 |
T |
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| Q |
175 |
atgggtgactatttactagattctatggagaccattttggtatctccacctctta |
229 |
Q |
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| T |
36637 |
atgagt---aattcaaatgattctatggaaacccttttggtatctccacctctta |
36688 |
T |
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